Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.
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May 8, 2024 - HTML
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immunofluorescence
Here are 32 public repositories matching this topic...
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
life-sciences-image gating mcd ome-tiff imc histology image-analysis-workflows tissue-classification cell-segmentation bioimage-informatics bioimaging single-cell-analysis bioimage-analysis histological-images immunofluorescence bioimage-tools imaging-mass-cytometry tissue-analysis
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Sep 23, 2025 - R
collection of mass spectrometry imaging workflows
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Mar 17, 2026 - Python
The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.
cancer-imaging-research multispectral-images immunofluorescence cancer-immunotherapy cancer-immunology multiplex-imaging
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Apr 21, 2025 - Python
UniFORM: Towards Universal ImmunoFluorescence Normalization for Multiplex Tissue Imaging
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Jul 30, 2025 - Jupyter Notebook
This is the official repo for the Liver Kidney Stomach dataset introduced in the paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.
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Aug 26, 2020 - Python
Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.
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Sep 18, 2025 - JavaScript
Automated benchmarking and selection of clustering algorithms (KMeans, Agglomerative, Spectral, GMM, DBSCAN) for spatial/multiplex immunofluorescence data, using Hopkins statistic, PCA, multi-metric evaluation (Silhouette, Davies-Bouldin, Calinski-Harabasz, ARI stability) and automatic best-method selection.
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Jun 27, 2026 - Python
A Comprehensive Workflow for image preprocessing.
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Mar 18, 2026 - Jupyter Notebook
Python interface to detect and quantify intranuclear proteins
python bioinformatics detection pyqt5 pypi image-processing python3 sqlite3 quantification digital-image-processing dna-damage skimage immunofluorescence
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May 4, 2026 - Python
A package for processing immunofluorescence (IF) microscopy image data.
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Aug 20, 2025 - Python
Minerva Cloud is a novel cloud-native (AWS) platform for high-dimensional microscopy image storage, management, and visualization.
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Oct 5, 2023 - Python
Minerva Cloud is a novel cloud-based (AWS) software for high-dimensional image management, storage and visualization.
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Feb 13, 2026 - JavaScript
IHC scoring of multi-channel images
imagej2 scoring batch bio-formats multi-channel macro dab ihc polaris immunofluorescence vectra staining immunohistochemistry akoya-biosciences ionpath hematoxylin mibiscope
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Apr 26, 2023 - ImageJ Macro
Quality control pipeline for MACSima / MACSiQView cell segmentation
python package microscopy cell-segmentation isolation-forest bioimaging immunofluorescence automatic-segmentation macsima maciqview
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Jun 26, 2026 - Python
Python-based pipeline for segmentation quality control and unsupervised clustering of immunofluorescence spatial-omics data.
python bioinformatics clustering segmentation image-analysis spatial-proteomics immunofluorescence spatial-omics macsima maciqview
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Jun 29, 2026 - Jupyter Notebook
A Python library for segmentation and classification of objects in microscopy images
python bioinformatics classification segmentation image-analysis microscopy histology immunofluorescence
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Jan 26, 2021 - Python
AMMIT is an R package designed to streamline the processing of immunofluorescence data.
bioinformatics spatial-analysis spatial-data image-analysis bioinformatics-tool immunofluorescence immunohistochemistry
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Apr 8, 2025 - R
Code for the paper: Deep Learning architectures for generalized immunofluorescence based nuclear image segmentation
deep-learning neural-networks image-segmentation generative-adversarial-networks ensemble-machine-learning immunofluorescence
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May 30, 2022 - JavaScript
A multi resolution volume renderer, specifically for analysing biomarker interactions in 3D CyCIF.
vtk volume-rendering microscopy immunofluorescence 3d-microscopy trame immunofluorescence-microscopy-analysis
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Apr 14, 2026 - Python
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