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  1. macsima-qc macsima-qc Public

    Quality control pipeline for MACSima / MACSiQView cell segmentation

    Python 1

  2. MACSima_Spatial-Omics-Pipeline MACSima_Spatial-Omics-Pipeline Public

    Python-based pipeline for segmentation quality control and unsupervised clustering of immunofluorescence spatial-omics data.

    Jupyter Notebook 1

  3. spatial-cluster-compare spatial-cluster-compare Public

    Automated benchmarking and selection of clustering algorithms (KMeans, Agglomerative, Spectral, GMM, DBSCAN) for spatial/multiplex immunofluorescence data, using Hopkins statistic, PCA, multi-metri…

    Python 3