nf-ica-cli

CLI toolkit for orchestrating Nextflow pipeline deployments to Illumina Connected Analytics (ICA).

Installation

pip install -e ".[dev]"

Configuration

The CLI needs access to the nf-ica configuration repository. Set the NF_ICA_REPO_PATH environment variable to the root of your local clone:

export NF_ICA_REPO_PATH=/path/to/nf-ica

If NF_ICA_REPO_PATH is not set, the CLI falls back to searching upward from the current working directory for a directory containing config/workflows.yaml.

Usage

nf-ica --help