NODDI priors_ventricles mask

[Joanasousa03]

Hi, everyone.

I'm trying to use scil_NODDI_priors to have a mask of the ventricles, making use of fa_max_ventricles and md_min_ventricles values.
However, it always misses voxels that are within the interval of FA and MD values I chose for the ventricles. It seems like a perfect crop of the ventricles mask, and I'm wondering what the problem is.

I'm attaching an example.
For this mask I used fa_max_ventricles = 0.7 and md_min_ventricles = 0.0018, and as you can see there's voxels outside the mask within these values...
If anyone could help me :)

[arnaudbore]

Hi @Joanasousa03 ,
Sorry for the delay.
Can you share with me the images as well the command line you are running ?
I'll take a look 👍

[Joanasousa03]

Hello, @arnaudbore.
I just solved that one problem. However I have some other doubts about the scil_NODDI_ commands.
Would it be possible to be in touch with you outside the forum?