Skip to content

@scilus Sherbrooke Connectivity Imaging Lab

All

    Repositories list

    61 repositories

    • neurogister

      Public
      Python
      •1•2•1•1•Updated Sep 21, 2026Sep 21, 2026

    • scilpy

      Public
      The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
      Python
      •
      Other
      •78•103•41•21•Updated Sep 21, 2026Sep 21, 2026

    • scilus_website

      Public
      SCIL website
      HTML
      •
      MIT License
      •8•0•0•0•Updated Sep 16, 2026Sep 16, 2026

    • scil-documentation

      Public
      Documentation for the SCIL
      Python
      •21•4•12•6•Updated Sep 8, 2026Sep 8, 2026

    • sf-tractomics

      Public
      Diffusion MRI Pipeline for human brain
      Nextflow
      •
      MIT License
      •10•8•7•1•Updated Sep 3, 2026Sep 3, 2026

    • sf-pediatric-documentation

      Public
      MDX
      •1•0•0•0•Updated Aug 20, 2026Aug 20, 2026

    • sf-pediatric

      Public
      sf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.
      pipelinediffusion-mripediatrics
      pipelinediffusion-mripediatrics
      Nextflow
      •
      MIT License
      •1•12•1•0•Updated Aug 19, 2026Aug 19, 2026

    • mi-brain

      Public
      C++
      •
      Other
      •0•0•2•1•Updated Aug 10, 2026Aug 10, 2026

    • sf-mouse

      Public
      Diffusion MRI Pipeline for Mouse
      mousedwibrain
      mousedwibrainnf-corenextflow-pipelinenf-neuro
      Nextflow
      •
      MIT License
      •2•1•5•0•Updated Jul 31, 2026Jul 31, 2026

    • sf-mouse-documentation

      Public
      MDX
      •1•0•0•1•Updated Jul 27, 2026Jul 27, 2026

    • sf-tractomics-documentation

      Public
      sf-tractomics documentation
      pipelinenextflowmri
      pipelinenextflowmridiffusionnf-neuro
      MDX
      •3•0•2•0•Updated Jun 20, 2026Jun 20, 2026

    • nf-scil

      Public archive
      SCIL Nextflow Toolbox
      Nextflow
      •
      GNU General Public License v3.0
      •16•1•0•0•Updated Jun 12, 2026Jun 12, 2026

    • containers-scilus

      Public
      Files needed to build a container to run all scilus flows.
      Dockerfile
      •5•4•4•1•Updated Jun 6, 2026Jun 6, 2026

    • trigeminal

      Public
      Shell
      •3•0•0•3•Updated Mar 19, 2026Mar 19, 2026

    • connectoflow

      Public
      Nextflow
      •
      MIT License
      •5•3•2•0•Updated Mar 14, 2026Mar 14, 2026

    • combine_flows

      Public
      Shell
      •6•0•1•0•Updated Feb 19, 2026Feb 19, 2026

    • tractometry_flow

      Public
      Nextflow
      •13•1•0•1•Updated Feb 5, 2026Feb 5, 2026

    • register_flow

      Public
      Nextflow
      •2•1•1•0•Updated Nov 18, 2025Nov 18, 2025

    • teaching_imn359

      Public
      Python
      •2•1•0•0•Updated Nov 17, 2025Nov 17, 2025

    • tractoflow_documentation

      Public
      Documentation related files for tractoflow
      Python
      •6•0•2•0•Updated Nov 5, 2025Nov 5, 2025

    • scilpy-bot

      Public
      Exploration of contextual approach for LLM and scilpy scripts
      Python
      •3•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • extractor_flow

      Public
      Nextflow
      •2•5•0•1•Updated Aug 29, 2025Aug 29, 2025

    • quactography

      Public
      Python
      •
      Apache License 2.0
      •8•1•4•3•Updated Aug 13, 2025Aug 13, 2025

    • beyond_fa_challenge

      Public
      SCIL team project for the beyond_fa_challenge
      Nextflow
      •6•0•0•3•Updated Jun 27, 2025Jun 27, 2025

    • noddi_flow

      Public
      Nextflow
      •
      MIT License
      •3•0•0•0•Updated Jun 26, 2025Jun 26, 2025

    • rbx_flow

      Public
      Nextflow
      •
      MIT License
      •11•7•2•1•Updated Jun 24, 2025Jun 24, 2025

    • freesurfer_flow

      Public
      Shell
      •
      MIT License
      •4•1•3•0•Updated May 7, 2025May 7, 2025

    • freewater_flow

      Public
      Nextflow
      •
      MIT License
      •5•9•1•0•Updated May 7, 2025May 7, 2025

    • dmri-explorer

      Public
      A real-time diffusion MRI viewer for Linux and Windows using OpenGL 4.6.
      visualizationopenglcpp
      visualizationopenglcppdiffusion-mri
      C++
      •
      MIT License
      •7•10•9•1•Updated Apr 23, 2025Apr 23, 2025

    • mrds_flow

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.