Skip to content

@hbctraining Teaching materials at the Harvard Chan Bioinformatics Core

All

    Repositories list

    65 repositories

    • Intro-to-spatial-transcriptomics

      Public
      This is a repository for the Introduction to Spatial Transcriptomics course materials
      R
      •5•8•3•0•Updated Oct 6, 2026Oct 6, 2026

    • main

      Public template
      SCSS
      •
      Other
      •17•59•0•1•Updated Oct 2, 2026Oct 2, 2026

    • BMI714_Intro_to_HPC

      Public
      Shell
      •
      Other
      •14•8•0•0•Updated Sep 30, 2026Sep 30, 2026

    • Shell-for-bioinformatics

      Public
      HTML
      •22•60•6•0•Updated Sep 24, 2026Sep 24, 2026

    • Intro-to-R-flipped

      Public
      CSS
      •44•94•2•0•Updated Aug 26, 2026Aug 26, 2026

    • Intro-to-scRNAseq

      Public
      CSS
      •209•672•21•3•Updated Aug 20, 2026Aug 20, 2026

    • Training-modules

      Public
      Materials for short, half-day workshops
      Jupyter Notebook
      •
      Other
      •151•366•19•3•Updated Jul 22, 2026Jul 22, 2026

    • Intro-to-Python

      Public
      CSS
      •0•3•5•0•Updated Jul 17, 2026Jul 17, 2026

    • external

      Public
      SCSS
      •
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated May 29, 2026May 29, 2026

    • Intro-to-variant-analysis

      Public
      HTML
      •13•36•8•1•Updated May 28, 2026May 28, 2026

    • Intro-to-DGE

      Public
      HTML
      •85•225•3•0•Updated May 28, 2026May 28, 2026

    • Tools-for-reproducible-research

      Public
      R
      •10•14•15•0•Updated Apr 15, 2026Apr 15, 2026

    • spatial_nanocourse

      Public
      Module for Visium HD analysis for Nanocourse organized by SCC
      HTML
      •4•3•7•0•Updated Mar 20, 2026Mar 20, 2026

    • FoG_scRNA-seq_viz

      Public
      https://hbctraining.github.io/FoG_scRNA-seq_viz/
      CSS
      •
      Creative Commons Zero v1.0 Universal
      •1•1•0•0•Updated Mar 20, 2026Mar 20, 2026

    • Pseudobulk-for-scRNAseq-Quarto

      Public
      CSS
      •1•4•0•0•Updated Mar 20, 2026Mar 20, 2026

    • Intro-to-R-Quarto

      Public
      R
      •2•1•2•0•Updated Mar 20, 2026Mar 20, 2026

    • Intro-to-RShiny

      Public
      CSS
      •0•1•2•0•Updated Mar 20, 2026Mar 20, 2026

    • Intro-to-rnaseq-hpc-gt

      Public
      Introduction to RNA-seq using HPC
      Shell
      •19•11•1•0•Updated Mar 20, 2026Mar 20, 2026

    • In-depth-NGS-Data-Analysis-Course-1

      Public
      HTML
      •
      Other
      •264•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • Intro-to-R-online-Catalyst

      Public
      Contains materials for an online version of the Introduction to R
      SCSS
      •2•4•0•0•Updated Mar 20, 2026Mar 20, 2026

    • versioning_data_scripts

      Public
      GitKraken lesson (forked from HBS-RCS)
      R
      •22•10•1•0•Updated Mar 20, 2026Mar 20, 2026

    • Rmarkdown_analysis_reports

      Public
      rrmarkdownreports
      rrmarkdownreports
      SCSS
      •3•4•2•0•Updated Mar 20, 2026Mar 20, 2026

    • GCC-BOSC-2018

      Public
      Lessons for "Setting up for Success when planning an RNA-seq experiment" session at GCC-BOSC 2018
      HTML
      •
      Other
      •12•5•1•0•Updated Mar 20, 2026Mar 20, 2026

    • rnaseq_overview

      Public
      Short course describing the considerations for a successful RNA-seq experiment
      HTML
      •
      Other
      •13•19•9•0•Updated Mar 20, 2026Mar 20, 2026

    • RNA-seq-CB321qc_2022

      Public
      Teaching RNA-seq experimental design and analysis + data storage and sharing for genomics data
      SCSS
      •6•3•0•0•Updated Mar 20, 2026Mar 20, 2026

    • rnaseq-cb321

      Public
      June 5, 2019
      HTML
      •3•9•0•0•Updated Mar 20, 2026Mar 20, 2026

    • bioinformatics_online

      Public
      Resource list and preparation instructions for online learning and teaching for Bioinformatics
      bioinformatics-learningbioinformatics-learning-resourcesbioinformatics-online
      bioinformatics-learningbioinformatics-learning-resourcesbioinformatics-online
      SCSS
      •10•19•0•0•Updated Mar 20, 2026Mar 20, 2026

    • BBS230B_2023

      Public
      RNA-seq experimental design and analysis
      SCSS
      •6•4•0•0•Updated Mar 20, 2026Mar 20, 2026

    • EpiR

      Public
      Introduction to R for Epi summer program
      SCSS
      •4•3•0•0•Updated Mar 20, 2026Mar 20, 2026

    • Accessing_public_genomic_data

      Public
      Tutorials on accessing public reference and genomic data
      HTML
      •16•32•2•0•Updated Mar 20, 2026Mar 20, 2026
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.