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    217 repositories

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •12•10•0•3•Updated Oct 1, 2026Oct 1, 2026

    • ensembl-variation-pipelines

      Public
      Python
      •
      Apache License 2.0
      •5•0•0•11•Updated Oct 1, 2026Oct 1, 2026

    • ensembl-genes-metadata

      Public
      TypeScript
      •
      Apache License 2.0
      •2•1•3•2•Updated Oct 1, 2026Oct 1, 2026

    • ensembl-py

      Public
      Python Ensembl code source repository
      Python
      •
      Apache License 2.0
      •11•6•0•1•Updated Oct 1, 2026Oct 1, 2026

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •4•4•0•7•Updated Oct 1, 2026Oct 1, 2026

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •188•575•60•8•Updated Oct 1, 2026Oct 1, 2026

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •6•2•0•1•Updated Oct 1, 2026Oct 1, 2026

    • ensembl-client

      Public
      The frontend of the new Ensembl website
      TypeScript
      •
      Apache License 2.0
      •4•17•0•3•Updated Oct 1, 2026Oct 1, 2026

    • ensembl-anno

      Public
      Ensembl Automatic annotation pipeline
      annotation
      annotation
      Python
      •
      Apache License 2.0
      •7•11•1•1•Updated Oct 1, 2026Oct 1, 2026

    • nextflow_modules

      Public
      A collection of shared Ensembl modules used in NextFlow pipelines
      Nextflow
      •3•4•1•5•Updated Sep 30, 2026Sep 30, 2026

    • ensembl-datacheck-py

      Public
      Python
      •
      Apache License 2.0
      •6•2•0•4•Updated Sep 30, 2026Sep 30, 2026

    • distiller

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Sep 30, 2026Sep 30, 2026

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •36•18•0•2•Updated Sep 30, 2026Sep 30, 2026

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•2•0•2•Updated Sep 29, 2026Sep 29, 2026

    • ensembl-web-track-api

      Public
      A Django app for serving the available annotation tracks for Ensembl client.
      Python
      •
      Apache License 2.0
      •1•1•0•2•Updated Sep 29, 2026Sep 29, 2026

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •3•1•0•0•Updated Sep 29, 2026Sep 29, 2026

    • ensembl-cdm-docs

      Public
      Core data modeling documentation repository.
      Apache License 2.0
      •0•1•8•2•Updated Sep 29, 2026Sep 29, 2026

    • ensembl-web-metadata-api

      Public
      Metadata API for beta.ensembl.org
      Python
      •
      Apache License 2.0
      •1•0•1•2•Updated Sep 29, 2026Sep 29, 2026

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •2•3•0•11•Updated Sep 28, 2026Sep 28, 2026

    • ensembl-web-tools-api

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•2•Updated Sep 28, 2026Sep 28, 2026

    • ensembl-elements

      Public
      Ensembl shared elements
      TypeScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 26, 2026Sep 26, 2026

    • public-plugins

      Public
      Plugins for an Ensembl website
      HTML
      •
      Apache License 2.0
      •50•9•0•1•Updated Sep 25, 2026Sep 25, 2026

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •59•30•0•6•Updated Sep 23, 2026Sep 23, 2026

    • ensembl-production-imported

      Public
      Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)
      Perl
      •
      Apache License 2.0
      •4•1•0•2•Updated Sep 23, 2026Sep 23, 2026

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformatics
      mysqlapibioinformaticsdatabaseperlensemblcomparative-genomics
      Perl
      •
      Apache License 2.0
      •68•56•0•2•Updated Sep 22, 2026Sep 22, 2026

    • regulation-workflow-containers

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 22, 2026Sep 22, 2026

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •124•172•6•2•Updated Sep 22, 2026Sep 22, 2026

    • ensembl-website-help-and-docs

      Public
      documentation for the new Ensembl site
      TypeScript
      •7•1•0•2•Updated Sep 21, 2026Sep 21, 2026

    • ensembl-Swiper

      Public
      0•0•0•0•Updated Sep 18, 2026Sep 18, 2026

    • ensembl-dauphin-style-compiler

      Public
      "dauphin" style-compiler for genome browser
      Rust
      •1•0•10•1•Updated Sep 17, 2026Sep 17, 2026
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