Just reporting a broken link in the documentation.
Variant Calling
The results regarding variant calling are collected in {outdir}/variant_calling/. If some results from a variant caller do not appear here, please check out the --tools section in the parameter [documentation](https://nf-co.re/sarek/latest/parameters).
(Recalibrated) CRAM files can used as an input to start the variant calling.
SNVs and small indels
For single nucleotide variants (SNVs) and small indels, multiple tools are available for normal (germline), tumor-only, and tumor-normal (somatic) paired data. For a list of the appropriate tool(s) for the data and sequencing type at hand, please check [here](https://nf-co.re/sarek/3.10.0/docs/output/usage#which-tool).
Thanks.
Hi,
Thanks very much for this pipeline and the great documentation!
Just reporting a broken link in the documentation.
Link found here:
https://nf-co.re/sarek/3.10.0/docs/output/#variant-calling, at the end of the SNVs and small indels (broken link = https://nf-co.re/sarek/3.10.0/docs/output/usage#which-tool )
Thanks.