ChIP-seq_Analysis_Code

A set of scripts for the analysis of ChIP-seq data using established bioinfomatics tools

Name		Name	Last commit message	Last commit date
README.md		README.md
alignment.sh		alignment.sh
all_RNA_deeptools.sh		all_RNA_deeptools.sh
all_gene_analysis_metaplots.sh		all_gene_analysis_metaplots.sh
all_gene_analysis_metaplots_decile.sh		all_gene_analysis_metaplots_decile.sh
all_gene_analysis_metaplots_quantile.sh		all_gene_analysis_metaplots_quantile.sh
bigwig_compare.sh		bigwig_compare.sh
correlation.sh		correlation.sh
deeptools_replot_profiles_for_Prism.sh		deeptools_replot_profiles_for_Prism.sh
featureCounts.sh		featureCounts.sh
qc_analysis.sh		qc_analysis.sh
rename_bigwig.sh		rename_bigwig.sh
replot_profiles.sh		replot_profiles.sh
rpb3_analysis_10_deciles.sh		rpb3_analysis_10_deciles.sh
rpb3_analysis_10_deciles_replot_profiles.sh		rpb3_analysis_10_deciles_replot_profiles.sh
rpb3_analysis_decile.sh		rpb3_analysis_decile.sh
rpb3_analysis_quantile.sh		rpb3_analysis_quantile.sh
rpb3_analysis_quartiles.sh		rpb3_analysis_quartiles.sh
spike_in_normalization.sh		spike_in_normalization.sh

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