Salivary Segmentation Models

This project tracks the model assignments for the jrc_mus-salivary-* datasets and the Hugging Face DOI citations for the exported salivary models.

Dataset Model Assignments

Dataset	Mito model	Nucleus model
jrc_mus-salivary-1	mito_mouse_16_362000	nuc_mouse_64_90000
jrc_mus-salivary-2	mito_mouse_16_362000	nuc_all_mixed_32_582000
jrc_mus-salivary-3	mito_mouse_16_362000	nuc_mouse_32_342000

Published Hugging Face Models

Local alias	Hugging Face repo	DOI
mito_mouse_16_362000	cellmap/salivary_20250806_mito_mouse_distance_16nm_362000	10.57967/HF/9493
nuc_all_mixed_32_582000	cellmap/salivary_20250725_nuc_all_mixed_distance_32nm_582000	10.57967/HF/9499
nuc_mouse_32_342000	cellmap/salivary_20250806_nuc_mouse_distance_32nm_342000	10.57967/HF/9492

nuc_mouse_64_90000 is listed in the dataset assignments above, but no matching public Hugging Face DOI was found for it during the citation fetch.

APA Citations

Mitochondria model

Janelia Cellmap. (2026). salivary_20250806_mito_mouse_distance_16nm_362000 (Version 7df6a60). Hugging Face. https://doi.org/10.57967/HF/9493

Mixed nucleus model

Janelia Cellmap. (2026). salivary_20250725_nuc_all_mixed_distance_32nm_582000 (Version 82cfdb4). Hugging Face. https://doi.org/10.57967/HF/9499

Mouse nucleus model

Janelia Cellmap. (2026). salivary_20250806_nuc_mouse_distance_32nm_342000 (Version 8d2195d). Hugging Face. https://doi.org/10.57967/HF/9492

BibTeX

@misc{janelia_cellmap_2026_salivary_mito_mouse_distance_16nm_362000,
  doi = {10.57967/HF/9493},
  url = {https://huggingface.co/cellmap/salivary_20250806_mito_mouse_distance_16nm_362000},
  author = {{Janelia Cellmap}},
  title = {salivary_20250806_mito_mouse_distance_16nm_362000},
  publisher = {Hugging Face},
  year = {2026}
}

@misc{janelia_cellmap_2026_salivary_nuc_all_mixed_distance_32nm_582000,
  doi = {10.57967/HF/9499},
  url = {https://huggingface.co/cellmap/salivary_20250725_nuc_all_mixed_distance_32nm_582000},
  author = {{Janelia Cellmap}},
  title = {salivary_20250725_nuc_all_mixed_distance_32nm_582000},
  publisher = {Hugging Face},
  year = {2026}
}

@misc{janelia_cellmap_2026_salivary_nuc_mouse_distance_32nm_342000,
  doi = {10.57967/HF/9492},
  url = {https://huggingface.co/cellmap/salivary_20250806_nuc_mouse_distance_32nm_342000},
  author = {{Janelia Cellmap}},
  title = {salivary_20250806_nuc_mouse_distance_32nm_342000},
  publisher = {Hugging Face},
  year = {2026}
}