C++ implementation of DSP module for HTT allelic structure definition
Work in progress jesus christ i'm so rusty at C++
Utilises SEQAN for an alignment assembly interface (https://www.seqan.de/) so that must be in your /usr/local/include folder Also utilises a C++ implementation of the difflib library from Python (https://github.com/duckie/difflib), pop that in /usr/local/include also.
Compiled via: $ g++-7 -std=c++17 -lz -D SEQAN_HAS_ZLIB -fconcepts -I /usr/local/include