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Add European Galaxy server badge to Readme#1444

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grobidOrg:masterfrom
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Add European Galaxy server badge to Readme#1444
bgruening wants to merge 1 commit into
grobidOrg:masterfrom
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@bgruening

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Hi, we added GROBID to the European Galaxy server.

Galaxy is an open-source platform that allows researchers to analyze and share scientific data using interoperable APIs and various user-friendly web-based interfaces. The Galaxy project was launched in 2005 and has since become a powerful framework for researchers across a wide range of research fields, including *omics, biodiversity, machine learning, cheminformatics, NLP, material science, climate research, and humanities.

Everyone can use it for free on public funded resources. We hope this might be useful for the community. Please let us know if we should add any missing features or if you encounter issues.

Thanks a lot for GROBID.

@lfoppiano

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@bgruening thank you for reaching out. I'm very interested in knowing more.

The Galaxy project was launched in 2005 and has since become a powerful framework for researchers across a wide range of research fields, including *omics, biodiversity, machine learning, cheminformatics, NLP, material science, climate research, and humanities.

2005? Is that correct? How is it run and how long will be funded?

I tried to look for Grobid on the interface but could not manage, I think we should add more documentation as well otherwise it might get people confused.

@bgruening

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2005? Is that correct? How is it run and how long will be funded?

Yes, this is correct. Its a world-wide project with funding in the US, AU, EU. An Open Source project with many research groups "owning" the project. We have a sustainability report (written for an EU grant, so a bit EU centered) if this is interesting for you.

I tried to look for Grobid on the interface but could not manage, I think we should add more documentation as well otherwise it might get people confused.

Oh sorry, for that. We can link to the training portal (https://training.galaxyproject.org/). Have you tried to click the link behind the badge: https://usegalaxy.eu/root?tool_id=grobid_grobid

You should see something like that:

image

If you upload a PDF, you can start the tool. You can also use our test data for the tool, by clicking "Generate Tour":

image

If you are interested in more details we have a Digital Humanities community (https://galaxyproject.org/community/sig/digital-humanities/) and also a lot of LLM tools in Galaxy which we could combine with the output of your tools.

@lfoppiano

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Thanks @bgruening. Looks better, so it would be possible, for example, to upload a large dataset of PDF and then run grobid over them? I'm thinking this could be offered as a complementary approach of the huggingface demo, which is designed for small tests.

Do you know by any chance people or teams that have successfully used Grobid through galaxy?

@bgruening

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Yes, this would be possible. You get a lot of storage and can run as many tools as you want. Galaxy is offering 4000 tools (Grobid is one of them). You get storage and support (we try our best).

Do you know by any chance people or teams that have successfully used Grobid through galaxy?

No, we just had a use-case where we thought Grobid would fit so we integrated it.

I'm thinking this could be offered as a complementary approach of the huggingface demo, which is designed for small tests.

Thats sounds great. We would support real world use-cases.

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