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Batch — October 17, 2026 (#68, #69, #70) - #71
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October 16, 2026 19:48
The bundled configuration stays the lowest argument layer and --help still shows its values as defaults. Printing it as a separate command and ignoring it wholesale added surface few users need: the arguments file can be downloaded from the app, and any value can be overridden with --arguments or a flag.
… review/2026-10-17
… review/2026-10-17
configs[0].execution in the .adg carries the environments and resources the app would use, in the shape of a --config file. The CLI applies it as the lowest environment layer; a --config file overrides it for every field it sets. The run header lists each plugin's environment and its source.
The output is written into it under its own name: --output-table /data/run1/ writes /data/run1/table.qza. The same rule applies to publish destinations and to output paths in a pipeline file's config or an arguments file. Only the text decides, never the disk, so a shared pipeline means the same thing on every machine.
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One PR into dev so CI runs once; merging it marks #68, #69 and #70 as merged (their heads are all in this branch). This is the CLI John reviewed locally (the Desktop sidecar and the review
adagioran it).adagio pipeline configand--no-bundled-config(unreleased); saved values stay the lowest argument layer and show as--helpdefaults--config/is a directoryValidation: full suite on this branch, 281 passed, 1 Docker test skipped. No dependency changes.