University Medicine Essen
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FHIR-PYrate
FHIR-PYrate PublicFHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter reso…
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Body-and-Organ-Analysis
Body-and-Organ-Analysis PublicBOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical …
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saros-dataset
saros-dataset PublicSparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data
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Repositories
- CycleMED Public
CycleMED is a CycleGAN-based framework for medical image translation projects using MRI and CT data. The repository provides custom dataset loader including specific medical imaging preprocessings and adaptions for training runs.
- DeidentiFHIR Public
- BOA-MR Public
BOA-MR brings automated body composition analysis to T2-weighted MRI. Built by SHIP.AI @ the University Medicine Essen (UME) and the Institute for Artificial Intelligence in Medicine(IKIM) as the open companion to BOA CT.
- FHIR-PYrate Public
FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.
- MumbleMED Public
MumbleMED is developed by SHIP.AI group at the Institute for Artificial Intelligence in Medicine (IKIM) at the University Hospital Essen.
- PIGEON Public
- Body-and-Organ-Analysis Public
BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical images and identifying the different structures within the human body, including bones, muscles, organs, and blood vessels.
- DeidentiFHIR-Pipeline Public
With the DeidentiFHIR-Pipeline, you can transfer FHIR based data from one source (e.g. a FHIR server) to a target (e.g. a FHIR server) and pseudonymize the data in between. Pseudonymization is based on the DeidentiFHIR library.
- Volcano-HL7-MLLP-Connector Public
A high-performance HL7 v2 MLLP listener that converts healthcare messages to JSON and publishes them to Apache Kafka.
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