[Feature] Updating CMake for Windows Builds

.github/workflows/coverage.yml

@@ -0,0 +1,53 @@
+---
+name: HEP-CE Code Coverage
+# Schema: https://json.schemastore.org/github-action.json
+
+on:
+    push:
+        branches: ["main"]
+    pull_request:
+        branches: ["main"]
+
+jobs:
+    build:
+        name: Calculate Code Coverage
+        runs-on: ubuntu-latest
+        steps:
+            - name: Checkout Respond Repository
+              uses: actions/checkout@v6
+
+            - name: Install Boost
+              uses: MarkusJx/install-boost@v2
+              id: install-boost
+              with:
+                  boost_version: 1.84.0
+                  toolset: gcc
+
+            - name: Install gcovr
+              run: pip install gcovr
+
+            - name: Build and Test Project
+              run: >
+                  cmake --preset coverage && cmake --build --preset coverage && ctest --preset coverage
+              env:
+                  BOOST_ROOT: ${{ steps.install-boost.outputs.BOOST_ROOT }}
+
+            - name: Generate gcovr report HTML
+              run: |
+                  gcovr -r . --filter src --html coverage.html
+
+            - name: Generate gcovr report XML
+              run: |
+                  gcovr -r . --filter src --xml-pretty -o coverage.xml
+
+            - name: Upload Code Coverage Report
+              uses: actions/upload-artifact@v7
+              with:
+                  name: code-coverage-report
+                  path: coverage.*
+
+            - name: Generate Coverage Badge
+              uses: GaelGirodon/ci-badges-action@v1
+              with:
+                  gist-id: 10e746e28df5d23e91689b01493435a0
+                  token: ${{secrets.GIST_BADGE_TOKEN}}

.github/workflows/deploy-docs.yml

@@ -3,45 +3,55 @@ name: Docs
 # Controls when the action will run. Triggers the workflow on push or pull request
 # events but only for the master branch
 on:
-  push:
-    branches: ["main"] 
-  workflow_dispatch:
+    push:
+        branches: ["main"]
+    workflow_dispatch:
+
 permissions:
-  contents: write
-  
+    contents: write
+
 jobs:
-  deploy:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v4
-        with:
-          submodules: "true"
-
-      - name: Install dependencies
-        run: sudo apt-get update && sudo apt-get install -y wget graphviz rsync
-        shell: bash
-
-      - name: Install Doxygen v1.9.6
-        run: |
-          transformed_version=$(echo "1.9.6" | tr '.' '_')
-          wget https://github.com/doxygen/doxygen/releases/download/Release_${transformed_version}/doxygen-1.9.6.linux.bin.tar.gz
-          tar -xzf doxygen-1.9.6.linux.bin.tar.gz
-          sudo mv doxygen-1.9.6/bin/doxygen /usr/local/bin/doxygen
-        shell: bash
-
-      - name: Generate Doxygen Documentation
-        run: doxygen Doxyfile
-        shell: bash
-
-      - name: Create .nojekyll (ensures pages with underscores work on gh pages)
-        run: touch docs/doxygen/html/.nojekyll
-        shell: bash
-
-      - name: Deploy to GitHub Pages
-        uses: JamesIves/github-pages-deploy-action@v4
-        with:
-          repository-name: SyndemicsLab/hep-ce
-          branch: gh-pages
-          folder: docs/doxygen/html
-          target-folder: ./
+    deploy:
+        runs-on: ubuntu-latest
+        steps:
+            - name: Checkout repository
+              uses: actions/checkout@v6
+              with:
+                  submodules: "true"
+
+            - name: Install dependencies
+              run: sudo apt-get update && sudo apt-get install -y wget graphviz rsync
+              shell: bash
+
+            - name: Install Doxygen v1.9.6
+              run: |
+                  transformed_version=$(echo "1.9.6" | tr '.' '_')
+                  wget https://github.com/doxygen/doxygen/releases/download/Release_${transformed_version}/doxygen-1.9.6.linux.bin.tar.gz
+                  tar -xzf doxygen-1.9.6.linux.bin.tar.gz
+                  sudo mv doxygen-1.9.6/bin/doxygen /usr/local/bin/doxygen
+              shell: bash
+
+            - name: Configure Project
+              run: cmake --preset docs
+
+            - name: Generate Doxygen Documentation
+              run: doxygen Doxyfile
+              shell: bash
+
+            - name: Remove polyfill references from generated HTML
+              run: |
+                  find docs/doxygen/html -type f -name '*.html' -print0 |
+                      xargs -0 sed -i '/polyfill\.io\/v3\/polyfill\.min\.js/d'
+              shell: bash
+
+            - name: Create .nojekyll (ensures pages with underscores work on gh pages)
+              run: touch docs/doxygen/html/.nojekyll
+              shell: bash
+
+            - name: Deploy to GitHub Pages
+              uses: JamesIves/github-pages-deploy-action@v4
+              with:
+                  repository-name: SyndemicsLab/hep-ce
+                  branch: gh-pages
+                  folder: docs/doxygen/html
+                  target-folder: ./

.github/workflows/linux-unit-testing.yml

@@ -0,0 +1,38 @@
+name: Linux HEP-CE Unit Tests
+# Schema: https://json.schemastore.org/github-action.json
+
+on:
+    push:
+        branches: ["main"]
+    pull_request:
+        branches: ["main"]
+
+jobs:
+    unit-testing:
+        name: Testing ${{ matrix.os }} ${{matrix.build-variant}} build
+        runs-on: ${{ matrix.os }}
+        defaults:
+            run:
+                shell: bash
+
+        strategy:
+            matrix:
+                os: [ubuntu-latest] # macos-latest
+                build-variant: [shared, static]
+        steps:
+            - name: Checkout HEP-CE
+              uses: actions/checkout@v6
+
+            - name: Install Boost
+              uses: MarkusJx/install-boost@v2
+              id: install-boost
+              with:
+                  boost_version: 1.84.0
+                  toolset: gcc
+
+            - name: Run Testing Workflow
+              continue-on-error: true
+              run: cmake --workflow --preset test-debug-${{matrix.build-variant}}
+              env:
+                  BOOST_ROOT: ${{ steps.install-boost.outputs.BOOST_ROOT }}
+              timeout-minutes: 10

.github/workflows/windows-unit-testing.yml

@@ -0,0 +1,39 @@
+name: Windows HEP-CE Unit Tests
+# Schema: https://json.schemastore.org/github-action.json
+
+on:
+    push:
+        branches: ["main"]
+    pull_request:
+        branches: ["main"]
+
+jobs:
+    unit-testing:
+        name: Testing ${{ matrix.os }} ${{matrix.build-variant}} build
+        runs-on: ${{ matrix.os }}
+        defaults:
+            run:
+                shell: pwsh
+
+        strategy:
+            matrix:
+                os: [windows-latest] # macos-latest
+                build-variant: [shared, static]
+        steps:
+            - name: Checkout HEP-CE
+              uses: actions/checkout@v6
+
+            - name: Install Boost
+              uses: MarkusJx/install-boost@v2
+              id: install-boost
+              with:
+                  boost_version: 1.84.0
+                  toolset: mingw
+
+            - name: Run Testing Workflow
+              env:
+                  BOOST_ROOT: ${{ steps.install-boost.outputs.BOOST_ROOT }}
+              run: |
+                  $env:Path = "C:\mingw64\bin;$env:Path"
+                  cmake --workflow --preset test-debug-${{ matrix.build-variant }}
+              timeout-minutes: 10

.gitignore

@@ -1,4 +1,5 @@
 *.log
+Doxyfile
 
 CMakeLists.txt.user
 CMakeCache.txt

CMakeLists.txt

@@ -182,18 +182,18 @@ target_sources(hepce_model
 #-------------------------------------------------------------------------------
 include(${PRIVATE_MODULE_PATH}/MakeDependenciesAvailable.cmake)
 
-find_package(SQLiteCpp REQUIRED)
 find_package(OpenMP REQUIRED)
 find_package(Boost REQUIRED)
 
+
 set(private_deps spdlog::spdlog OpenMP::OpenMP_CXX)
 if (HEPCE_CALCULATE_COVERAGE)
     list(APPEND private_deps gcov)
 endif()
 
 target_link_libraries(hepce_model
 PUBLIC
-    Boost::boost
+    Boost::headers
     SQLiteCpp
 PRIVATE
     ${private_deps}