All pull requests

Pull requests

• vc_grow_seg_from_seed: optional time_limit_s stops a trace between generations and saves its surface

  #2250·ChaseHendrick opened Oct 22, 2026·1 task done·

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• winding inference: add --precision and --decode-chunk-l (default unchanged)

  #2249·talanham19-png opened Oct 22, 2026·

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• Add fiber_qa.py: read-only checks for VC3D fiber annotation folders

  #2248·ChaseHendrick opened Oct 22, 2026·1 task done·

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• Opt in bilinear blend of node normals for linear surface interpolation

  #2247·evilaliv3 opened Oct 22, 2026Contributor·1 task done·

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• transformSurfacePoints: regrid the point grid with node 0 on node 0

  #2245·evilaliv3 opened Oct 22, 2026Contributor·1 task done·

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• zarr_tasks merge: create output levels through create_level_dataset so merge runs under zarr 3 (fixes #2240)

  #2244·stantheman0128 opened Oct 22, 2026Contributor·

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• spiral-fitting: stop extrapolating the umbilicus off the ends of the line, so the fit and VC3D share one scroll center (fixes #2239)

  #2242·ChaseHendrick opened Oct 22, 2026·1 task done·

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• zarr_tasks merge: test every pyramid level against an exact oracle

  #2238·albertotranquilli-cmyk opened Oct 22, 2026Contributor·

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• spiral-fitting: mask gap/damaged fiber span points out of the fit

  #2237·skyward7187 opened Oct 22, 2026Contributor·1 task·

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• spiral-fitting: cache per-call constant tensors in the gap and ACW flip

  #2234·phippsrtyler opened Oct 22, 2026Contributor·1 task done·

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• volume-cartographer: read and write volcodec_ng lossless zarr chunks, a faster-encoding lossless option

  #2232·ChaseHendrick opened Oct 22, 2026·1 task done·

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• ink inference: optional vc_reader backend for full-3D patch reads

  #2226·phippsrtyler opened Oct 22, 2026Contributor·1 task done·

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• volume-cartographer: opt-in GPU sampling for vc_render_tifxyz (scripts/render_gpu)

  #2225·phippsrtyler opened Oct 22, 2026Contributor·1 task done·

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• VC3D: Ctrl+K command palette, searchable Settings and keybinds, optional Modern themes, and a vc_objrefine offset report

  #2224·ChaseHendrick opened Oct 22, 2026·1 task done·

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• Keep a segment's subfolders when VC3D saves over it

  #2223·ChaseHendrick opened Oct 22, 2026·1 task done·

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• spiral-fitting: optional GPU connected components and parallel slabs in extract_surface_tracks

  #2221·phippsrtyler opened Oct 22, 2026Contributor·1 task done·

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• Physical scale: detect the audited shape (no unit / [1,1,1]) and use the manifest pitch

  #2220·gaogao94 opened Oct 22, 2026·

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• VC3D: redo and deeper undo, point crash recovery, status message history, and agent bridge commands

  #2219·ChaseHendrick opened Oct 22, 2026·1 task done·

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• lasagna: let gpu_pause import on Windows (no fcntl) so predict3d, training and the fit service start

  #2215·Rano200 opened Oct 21, 2026Contributor·1 task·

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• ink inference: document running several infer.py processes per GPU

  #2213·phippsrtyler opened Oct 21, 2026Contributor·1 task done·

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• spiral-fitting: opt-in separable LR upsample and CUDA/HIP graph replay of the eager RK4 integrate

  #2212·phippsrtyler opened Oct 21, 2026Contributor·1 task done·

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• ink_detection: evaluate scores predictions inside the validation mask and the training region separately

  #2210·teddywasserman opened Oct 21, 2026Contributor·1 task done·

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• ink_detection: native inference pads input depth and resizes the output like training (fixes #1507)

  #2207·tencur opened Oct 21, 2026Contributor·1 task done·

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• ink_detection: labels made with create_label_zarrs are now seen by flat training on 21- and 28-slice volumes

  #2206·tencur opened Oct 21, 2026Contributor·1 task done·

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• find_valid_patches: a plain array only satisfies level 0, so levels >= 1 fall back to full resolution (fixes #1970)

  #2205·stantheman0128 opened Oct 21, 2026Contributor·1 task done·

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