Issues

• 403 Forbidden for the ANANSE.REMAP.model.v1.0.tgz file

  vanheeringen-lab/ANANSE#219 · Filter by author xflicsu opened on Mar 25, 2026
  2

• output also peak region

  vanheeringen-lab/ANANSE#217 · Filter by author guandailu opened on Sep 22, 2024

• ananse network: distributed.core - ERROR - Exception while handling op shuffle_receive

  vanheeringen-lab/ANANSE#216 · Filter by author StevenBai97 opened on Jul 18, 2024
  1

• Error using custom PWM

  vanheeringen-lab/ANANSE#215 · Filter by author fmarletaz opened on Apr 24, 2024

• An error occurred when I use ananse influence with -w

  vanheeringen-lab/ANANSE#211 · Filter by author socialtree-yt opened on Dec 7, 2023
  5

• How to construct a network only focusing on my interesting genes?

  vanheeringen-lab/ANANSE#210 · Filter by author socialtree-yt opened on Dec 4, 2023
  11

• Can I use ananse to compare TFs networks between disease and normal condition such as aging and young ,or fibrosis disease and healthy control?

  vanheeringen-lab/ANANSE#209 · Filter by author socialtree-yt opened on Dec 4, 2023
  11

• Input X contains NaN

  vanheeringen-lab/ANANSE#208 · Filter by author Roki12543 opened on Dec 1, 2023
  4

• Usage of ANANSE in single-cell multiomic data

  vanheeringen-lab/ANANSE#199 · Filter by author PauBadiaM opened on Dec 7, 2022
  3

• ananse influence dropping factors with negative logFC

  vanheeringen-lab/ANANSE#157 · Filter by author apposada opened on Dec 16, 2021
  1

• CRE co-accessibility to link enhancers to gene( promoter)s

  enhancement
  vanheeringen-lab/ANANSE#154 · Filter by author siebrenf opened on Nov 26, 2021

• memory usage ananse network

  vanheeringen-lab/ANANSE#149 · Filter by author JGASmits opened on Oct 27, 2021
  

• Influence.py __init___ & run_influence merge?

  vanheeringen-lab/ANANSE#138 · Filter by author JGASmits opened on Sep 29, 2021

• Distance TF-target gene in diff_network output

  enhancement
  vanheeringen-lab/ANANSE#128 · Filter by author JGASmits opened on Sep 14, 2021
  1

  

• make formats the same for network and influence_diffnetwork output

  enhancement
  vanheeringen-lab/ANANSE#122 · Filter by author siebrenf opened on Jul 22, 2021

• what to put in the h5 file

  enhancement
  vanheeringen-lab/ANANSE#121 · Filter by author siebrenf opened on Jul 22, 2021
  2

• Adding peak edges to network -- Add feature request

  vanheeringen-lab/ANANSE#111 · Filter by author mriken opened on Jul 13, 2021
  6

• dask distributed workers die

  vanheeringen-lab/ANANSE#103 · Filter by author siebrenf opened on Jul 5, 2021
  6

• ananse network Out Of Memory (OOM) error and killed

  vanheeringen-lab/ANANSE#96 · Filter by author apposada opened on Jun 16, 2021
  31

• Low and negative motif weights

  question
  vanheeringen-lab/ANANSE#91 · Filter by author JGASmits opened on Jun 15, 2021

• Non-helpfull error region length

  vanheeringen-lab/ANANSE#90 · Filter by author JGASmits opened on Jun 15, 2021
  1

• A question about general mode in logistic mode

  vanheeringen-lab/ANANSE#89 · Filter by author shangguandong1996 opened on Jun 11, 2021
  2

• Check filtering steps in influence

  vanheeringen-lab/ANANSE#61 · Filter by author simonvh opened on Mar 25, 2021

• Ananse influence score for which TFs

  vanheeringen-lab/ANANSE#57 · Filter by author JGASmits opened on Mar 22, 2021
  1

  

• Network annotation file incorrect error

  vanheeringen-lab/ANANSE#56 · Filter by author JGASmits opened on Mar 9, 2021