fashr/NAMESPACE at main · stephenslab/fashr · GitHub

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# Generated by roxygen2: do not edit by hand

S3method(plot,fash)
S3method(predict,fash)
S3method(print,fash)
export(BF_compute)
export(BF_control)
export(BF_update)
export(compute_lfsr_sampling)
export(compute_lfsr_summary)
export(fash)
export(fash_eb_est)
export(fash_post_ordering)
export(fash_set_data)
export(fash_set_tmbdat)
export(fash_structure_plot)
export(fdr_control)
export(min_lfsr_sampling)
export(min_lfsr_summary)
export(plot_heatmap)
export(simulate_fash_prior)
export(simulate_process)
export(testing_functional)
export(visualize_fash_prior)
importFrom(LaplacesDemon,rmvnp)
importFrom(Matrix,forceSymmetric)
importFrom(TMB,MakeADFun)
importFrom(TMB,compile)
importFrom(cowplot,theme_cowplot)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,polygon)
importFrom(methods,as)
importFrom(mixsqp,mixsqp)
importFrom(numDeriv,jacobian)
importFrom(parallel,mclapply)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(stats,median)
importFrom(stats,nlminb)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
useDynLib(Gaussian_dep)
useDynLib(Gaussian_dep_fixed)
useDynLib(Gaussian_ind)
useDynLib(Gaussian_ind_fixed)
useDynLib(Poisson_ind)
useDynLib(Poisson_ind_fixed)