Dear Meiler Lab VUStruct Team,
I am using the VUStruct web server to analyze a set of missense variants, but my case has repeatedly halted with an exception. I have checked the input format carefully and also tried resubmitting the case, but the same type of error continues to occur.
The most recent case information is as follows:
VUStruct case ID: UDN20260622
VUStruct internal ID: 5c709107-86b0-4b45-a8c8-801af1b1b405
The error message is copied below:
An exception was generated and the case was halted
[Errno 2] No such file or directory: '/carbon14/hd1/mothcw/VUStructArchive/UDN20260622/UDN20260622.tar.gz'
Traceback (most recent call last):
File "/carbon14/hd1/mothcw/VUStructFlask/vustruct_flask.py", line 520, in launch_flask_case_thread
launch_psb_rep_returncode = flask_case.psb_rep_and_update_website(last_flag=(flask_case.last_module_returncode != 0),
File "/carbon14/hd1/mothcw/VUStructFlask/vustruct_flasklib/case_manager.py", line 787, in psb_rep_and_update_website
self.extract_local_website_tarball_to_webserver()
File "/carbon14/hd1/mothcw/VUStructFlask/vustruct_flasklib/case_manager.py", line 210, in extract_local_website_tarball_to_webserver
with tarfile.open(tar_filename) as tar_f:
File "/usr/lib64/python3.9/tarfile.py", line 1848, in open
return func(name, "r", fileobj, **kwargs)
File "/usr/lib64/python3.9/tarfile.py", line 1912, in gzopen
fileobj = GzipFile(name, mode + "b", compresslevel, fileobj)
File "/usr/lib64/python3.9/gzip.py", line 173, in init
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/carbon14/hd1/mothcw/VUStructArchive/UDN20260622/UDN20260622.tar.gz'
It appears that the expected report archive file was not generated or could not be found during the website update step. Since VUStruct is described as creating a final drill-downable report page after launching analyses on the Vanderbilt ACCRE cluster, I wonder whether this could be related to a backend report-generation or archive-extraction issue rather than the input file itself.
Could you please help check this case on your server, or let me know whether there is anything else I should modify in the input file?
I would be happy to provide the uploaded CSV file or any additional information that would help with troubleshooting.
Thank you very much for your help.
Best regards,
Yong Cao
Dear Meiler Lab VUStruct Team,
I am using the VUStruct web server to analyze a set of missense variants, but my case has repeatedly halted with an exception. I have checked the input format carefully and also tried resubmitting the case, but the same type of error continues to occur.
The most recent case information is as follows:
VUStruct case ID: UDN20260622
VUStruct internal ID: 5c709107-86b0-4b45-a8c8-801af1b1b405
The error message is copied below:
An exception was generated and the case was halted
[Errno 2] No such file or directory: '/carbon14/hd1/mothcw/VUStructArchive/UDN20260622/UDN20260622.tar.gz'
Traceback (most recent call last):
File "/carbon14/hd1/mothcw/VUStructFlask/vustruct_flask.py", line 520, in launch_flask_case_thread
launch_psb_rep_returncode = flask_case.psb_rep_and_update_website(last_flag=(flask_case.last_module_returncode != 0),
File "/carbon14/hd1/mothcw/VUStructFlask/vustruct_flasklib/case_manager.py", line 787, in psb_rep_and_update_website
self.extract_local_website_tarball_to_webserver()
File "/carbon14/hd1/mothcw/VUStructFlask/vustruct_flasklib/case_manager.py", line 210, in extract_local_website_tarball_to_webserver
with tarfile.open(tar_filename) as tar_f:
File "/usr/lib64/python3.9/tarfile.py", line 1848, in open
return func(name, "r", fileobj, **kwargs)
File "/usr/lib64/python3.9/tarfile.py", line 1912, in gzopen
fileobj = GzipFile(name, mode + "b", compresslevel, fileobj)
File "/usr/lib64/python3.9/gzip.py", line 173, in init
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/carbon14/hd1/mothcw/VUStructArchive/UDN20260622/UDN20260622.tar.gz'
It appears that the expected report archive file was not generated or could not be found during the website update step. Since VUStruct is described as creating a final drill-downable report page after launching analyses on the Vanderbilt ACCRE cluster, I wonder whether this could be related to a backend report-generation or archive-extraction issue rather than the input file itself.
Could you please help check this case on your server, or let me know whether there is anything else I should modify in the input file?
I would be happy to provide the uploaded CSV file or any additional information that would help with troubleshooting.
Thank you very much for your help.
Best regards,
Yong Cao