From e68e00e759c2938d77fc9f508cfb50918ae8e762 Mon Sep 17 00:00:00 2001
From: Sam Welborn <swelborn@slac.stanford.edu>
Date: Wed, 8 Jul 2026 10:58:01 -0400
Subject: [PATCH 1/8] add alembic

---
 pyproject.toml                              |  4 +++
 src/lclstream_api/v2/alembic/__init__.py    |  0
 src/lclstream_api/v2/alembic/env.py         | 34 +++++++++++++++++++++
 src/lclstream_api/v2/alembic/script.py.mako | 24 +++++++++++++++
 4 files changed, 62 insertions(+)
 create mode 100644 src/lclstream_api/v2/alembic/__init__.py
 create mode 100644 src/lclstream_api/v2/alembic/env.py
 create mode 100644 src/lclstream_api/v2/alembic/script.py.mako

diff --git a/pyproject.toml b/pyproject.toml
index 823e463..20e8342 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -25,6 +25,7 @@ dependencies = [
     "sqlalchemy>=2.0.51",
     "httpx>=0.28.1",
     "dbos>=2.0",
+    "alembic>=1.18.5",
 ]
 
 [dependency-groups]
@@ -50,6 +51,9 @@ include-package-data = false
 where = ["src"]
 #include = ["lclstream_api*"]
 
+[tool.alembic]
+script_location = "lclstream_api.v2:alembic"
+
 [tool.ruff]
 line-length = 88
 target-version = "py314"
diff --git a/src/lclstream_api/v2/alembic/__init__.py b/src/lclstream_api/v2/alembic/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/src/lclstream_api/v2/alembic/env.py b/src/lclstream_api/v2/alembic/env.py
new file mode 100644
index 0000000..a7c875f
--- /dev/null
+++ b/src/lclstream_api/v2/alembic/env.py
@@ -0,0 +1,34 @@
+import logging
+
+from alembic import context
+from sqlalchemy import create_engine, pool
+
+import lclstream_api.v2.tables as _tables  # noqa: F401 - registers tables
+from lclstream_api.v2.config import database
+from lclstream_api.v2.tables import Base
+
+config = context.config
+logging.basicConfig(level=logging.INFO)
+target_metadata = Base.metadata
+
+
+def get_url() -> str:
+    # set programmatically by scripts/gen_migration.py for testcontainers
+    url = config.get_alembic_option("sqlalchemy.url")
+    if url:
+        return url
+    # for running migrations against real db
+    return str(database.url)
+
+
+def run_migrations() -> None:
+    connectable = create_engine(get_url(), poolclass=pool.NullPool)
+
+    with connectable.connect() as connection:
+        context.configure(connection=connection, target_metadata=target_metadata)
+
+        with context.begin_transaction():
+            context.run_migrations()
+
+
+run_migrations()
diff --git a/src/lclstream_api/v2/alembic/script.py.mako b/src/lclstream_api/v2/alembic/script.py.mako
new file mode 100644
index 0000000..d0bde80
--- /dev/null
+++ b/src/lclstream_api/v2/alembic/script.py.mako
@@ -0,0 +1,24 @@
+"""${message}
+
+Revision ID: ${up_revision}
+Revises: ${down_revision | comma,n}
+Create Date: ${create_date}
+
+"""
+from alembic import op
+import sqlalchemy as sa
+${imports if imports else ""}
+
+# revision identifiers, used by Alembic.
+revision: str = ${repr(up_revision)}
+down_revision: str | list[str] | None = ${repr(down_revision)}
+branch_labels: str | list[str] | None = ${repr(branch_labels)}
+depends_on: str | list[str] | None = ${repr(depends_on)}
+
+
+def upgrade():
+    ${upgrades if upgrades else "pass"}
+
+
+def downgrade():
+    ${downgrades if downgrades else "pass"}

From a63ede6bec1ed2bffc08cc4bdfb96e4a9d51b8af Mon Sep 17 00:00:00 2001
From: Sam Welborn <swelborn@slac.stanford.edu>
Date: Wed, 8 Jul 2026 10:59:05 -0400
Subject: [PATCH 2/8] add generate migration script

---
 pyproject.toml           |  1 +
 scripts/gen_migration.py | 50 ++++++++++++++++++++++++++++++++++++++++
 2 files changed, 51 insertions(+)
 create mode 100644 scripts/gen_migration.py

diff --git a/pyproject.toml b/pyproject.toml
index 20e8342..6007e2a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -38,6 +38,7 @@ dev = [
     "pytest-asyncio>=1.4.0",
     "ruff>=0.15.17",
     "types-pyyaml>=6.0.12.20260518",
+    "testcontainers[postgres]>=4.14.2",
 ]
 
 [build-system]
diff --git a/scripts/gen_migration.py b/scripts/gen_migration.py
new file mode 100644
index 0000000..c0833a5
--- /dev/null
+++ b/scripts/gen_migration.py
@@ -0,0 +1,50 @@
+"""Generate an Alembic migration from SQLAlchemy ORM metadata."""
+
+import sys
+from pathlib import Path
+
+from alembic import command
+from alembic.config import Config
+from sqlalchemy import create_engine
+from testcontainers.postgres import PostgresContainer
+
+import lclstream_api.v2.tables as _tables  # noqa: F401 — registers tables on Base.metadata
+
+POSTGRES_IMAGE = "postgres:18"
+POSTGRES_DRIVER = "psycopg"
+REPO_ROOT = Path(__file__).parent.parent
+VERSIONS_DIR = REPO_ROOT / "src/lclstream_api/v2/alembic/versions"
+
+
+def main() -> None:
+    message = (
+        " ".join(sys.argv[1:])
+        if len(sys.argv) > 1
+        else input("Migration name: ").strip()
+    )
+    if not message:
+        print("Aborted: migration name cannot be empty.")
+        sys.exit(1)
+
+    before = {f for f in VERSIONS_DIR.glob("*.py") if f.name != "__init__.py"}
+
+    print(f"Starting {POSTGRES_IMAGE}...")
+    with PostgresContainer(POSTGRES_IMAGE) as pg:
+        engine = create_engine(pg.get_connection_url(driver=POSTGRES_DRIVER))
+        cfg = Config(toml_file=str(REPO_ROOT / "pyproject.toml"))
+        cfg.set_main_option(
+            "sqlalchemy.url", engine.url.render_as_string(hide_password=False)
+        )
+        command.upgrade(cfg, "head")
+        command.revision(cfg, autogenerate=True, message=message)
+        engine.dispose()
+
+    new_files = {
+        f for f in VERSIONS_DIR.glob("*.py") if f.name != "__init__.py"
+    } - before
+    for f in sorted(new_files):
+        print(f"Generated: {f.name}")
+
+
+if __name__ == "__main__":
+    main()

From 16391615cbb92ac5afc1b4b06e8e94766b82005c Mon Sep 17 00:00:00 2001
From: Sam Welborn <swelborn@slac.stanford.edu>
Date: Wed, 8 Jul 2026 10:59:25 -0400
Subject: [PATCH 3/8] add init db

---
 .../v2/alembic/versions/6ead17ed69da_init.py  | 70 +++++++++++++++++++
 .../v2/alembic/versions/__init__.py           |  0
 2 files changed, 70 insertions(+)
 create mode 100644 src/lclstream_api/v2/alembic/versions/6ead17ed69da_init.py
 create mode 100644 src/lclstream_api/v2/alembic/versions/__init__.py

diff --git a/src/lclstream_api/v2/alembic/versions/6ead17ed69da_init.py b/src/lclstream_api/v2/alembic/versions/6ead17ed69da_init.py
new file mode 100644
index 0000000..bfa7382
--- /dev/null
+++ b/src/lclstream_api/v2/alembic/versions/6ead17ed69da_init.py
@@ -0,0 +1,70 @@
+"""init
+
+Revision ID: 6ead17ed69da
+Revises:
+Create Date: 2026-07-08 10:49:38.890905
+
+"""
+
+import sqlalchemy as sa
+from alembic import op
+
+# revision identifiers, used by Alembic.
+revision: str = "6ead17ed69da"
+down_revision: str | list[str] | None = None
+branch_labels: str | list[str] | None = None
+depends_on: str | list[str] | None = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table(
+        "transfers",
+        sa.Column("id", sa.Uuid(), nullable=False),
+        sa.Column("user", sa.String(), nullable=False),
+        sa.Column("state", sa.String(), nullable=False),
+        sa.Column("parameters", sa.JSON(), nullable=False),
+        sa.Column("cache_id", sa.Uuid(), nullable=True),
+        sa.Column("cache_hostname", sa.String(), nullable=True),
+        sa.Column("pull_port", sa.Integer(), nullable=True),
+        sa.Column("push_port", sa.Integer(), nullable=True),
+        sa.Column("producer_job_id", sa.String(), nullable=True),
+        sa.Column("last_polled_at", sa.DateTime(timezone=True), nullable=True),
+        sa.Column(
+            "created_at",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.Column(
+            "updated_at",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.PrimaryKeyConstraint("id"),
+    )
+    op.create_table(
+        "transitions",
+        sa.Column("id", sa.Integer(), autoincrement=True, nullable=False),
+        sa.Column("transfer_id", sa.Uuid(), nullable=False),
+        sa.Column("state", sa.String(), nullable=False),
+        sa.Column("info", sa.String(), nullable=True),
+        sa.Column("source", sa.String(), nullable=True),
+        sa.Column(
+            "created_at",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.ForeignKeyConstraint(["transfer_id"], ["transfers.id"], ondelete="CASCADE"),
+        sa.PrimaryKeyConstraint("id"),
+    )
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_table("transitions")
+    op.drop_table("transfers")
+    # ### end Alembic commands ###
diff --git a/src/lclstream_api/v2/alembic/versions/__init__.py b/src/lclstream_api/v2/alembic/versions/__init__.py
new file mode 100644
index 0000000..e69de29

From bc9a4939fe1aebe8689e20a5a054594dac9bdd04 Mon Sep 17 00:00:00 2001
From: Sam Welborn <swelborn@slac.stanford.edu>
Date: Wed, 8 Jul 2026 11:00:24 -0400
Subject: [PATCH 4/8] add alembic post_write_hooks for ruff

---
 pyproject.toml | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/pyproject.toml b/pyproject.toml
index 6007e2a..1cbacaa 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -55,6 +55,18 @@ where = ["src"]
 [tool.alembic]
 script_location = "lclstream_api.v2:alembic"
 
+[[tool.alembic.post_write_hooks]]
+name = "ruff_format"
+type = "exec"
+executable = "uv"
+options = "run ruff format REVISION_SCRIPT_FILENAME"
+
+[[tool.alembic.post_write_hooks]]
+name = "ruff_check"
+type = "exec"
+executable = "uv"
+options = "run ruff check --fix REVISION_SCRIPT_FILENAME"
+
 [tool.ruff]
 line-length = 88
 target-version = "py314"

From f4339a9b055f122f04c91aa83e166b622fe05dbd Mon Sep 17 00:00:00 2001
From: Sam Welborn <swelborn@slac.stanford.edu>
Date: Wed, 8 Jul 2026 11:01:38 -0400
Subject: [PATCH 5/8] add test for migration success

---
 tests/v2/test_migrations.py | 49 +++++++++++++++++++++++++++++++++++++
 1 file changed, 49 insertions(+)
 create mode 100644 tests/v2/test_migrations.py

diff --git a/tests/v2/test_migrations.py b/tests/v2/test_migrations.py
new file mode 100644
index 0000000..dcd16e8
--- /dev/null
+++ b/tests/v2/test_migrations.py
@@ -0,0 +1,49 @@
+from collections.abc import Generator
+from pathlib import Path
+
+import pytest
+from alembic import command
+from alembic.config import Config
+from sqlalchemy import Engine, create_engine
+from testcontainers.postgres import PostgresContainer
+
+import lclstream_api.v2.tables as _tables  # noqa: F401 — registers all tables in Base.metadata
+
+POSTGRES_IMAGE = "postgres:18"
+POSTGRES_DRIVER = "psycopg"
+REPO_ROOT = Path(__file__).parent.parent.parent
+
+
+def _alembic_config(engine: Engine) -> Config:
+    cfg = Config(toml_file=str(REPO_ROOT / "pyproject.toml"))
+    cfg.set_main_option(
+        "sqlalchemy.url", engine.url.render_as_string(hide_password=False)
+    )
+    return cfg
+
+
+@pytest.fixture(scope="module")
+def postgres_engine() -> Generator[Engine]:
+    """Spin up a PostgreSQL container, apply all migrations, and yield a connected engine."""
+    with PostgresContainer(POSTGRES_IMAGE) as pg:
+        engine = create_engine(pg.get_connection_url(driver=POSTGRES_DRIVER))
+        command.upgrade(_alembic_config(engine), "head")
+        yield engine
+        engine.dispose()
+
+
+class TestMigrations:
+    def test_upgrade_succeeds(self, postgres_engine: Engine) -> None:
+        """alembic upgrade head must complete without error."""
+
+    def test_no_model_drift(self, postgres_engine: Engine) -> None:
+        """alembic check: no model changes are missing from the migration history."""
+        cfg = _alembic_config(postgres_engine)
+        # command.check raises MigrationSchemaMismatch if drift is detected.
+        command.check(cfg)
+
+    def test_downgrade_and_upgrade(self, postgres_engine: Engine) -> None:
+        """All migrations must be reversible back to base and re-applicable to head."""
+        cfg = _alembic_config(postgres_engine)
+        command.downgrade(cfg, "base")
+        command.upgrade(cfg, "head")

From 50459715b15c9084716c67443ff586df0b354190 Mon Sep 17 00:00:00 2001
From: Sam Welborn <swelborn@slac.stanford.edu>
Date: Wed, 8 Jul 2026 11:16:52 -0400
Subject: [PATCH 6/8] use alembic to create tables, rather than sqlalchemy

---
 src/lclstream_api/v2/db.py | 4 ----
 1 file changed, 4 deletions(-)

diff --git a/src/lclstream_api/v2/db.py b/src/lclstream_api/v2/db.py
index 7be7343..247d932 100644
--- a/src/lclstream_api/v2/db.py
+++ b/src/lclstream_api/v2/db.py
@@ -24,7 +24,6 @@
 )
 
 from .config import database
-from .tables import Base
 
 engine = create_async_engine(str(database.url))
 async_session = async_sessionmaker(engine, expire_on_commit=False)
@@ -35,9 +34,6 @@
 async def init_datasource() -> AsyncSQLAlchemyDatasource:
     global _datasource
     ds = await AsyncSQLAlchemyDatasource.create(str(database.url), engine=engine)
-    # create tables
-    async with engine.begin() as conn:
-        await conn.run_sync(Base.metadata.create_all)
     _datasource = ds
     return ds
 

From aa98dd4fc89959f99579cba27605f131a9d21408 Mon Sep 17 00:00:00 2001
From: Sam Welborn <swelborn@slac.stanford.edu>
Date: Wed, 8 Jul 2026 11:17:29 -0400
Subject: [PATCH 7/8] update uv lock

---
 uv.lock | 282 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 282 insertions(+)

diff --git a/uv.lock b/uv.lock
index b874c84..ef8d35d 100644
--- a/uv.lock
+++ b/uv.lock
@@ -138,6 +138,20 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/fb/76/641ae371508676492379f16e2fa48f4e2c11741bd63c48be4b12a6b09cba/aiosignal-1.4.0-py3-none-any.whl", hash = "sha256:053243f8b92b990551949e63930a839ff0cf0b0ebbe0597b0f3fb19e1a0fe82e", size = 7490, upload-time = "2025-07-03T22:54:42.156Z" },
 ]
 
+[[package]]
+name = "alembic"
+version = "1.18.5"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "mako" },
+    { name = "sqlalchemy" },
+    { name = "typing-extensions" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/1a/cc/ac0bed8e562e7407fe55c3ba85a4dce86e6dbd8730887bd1e406a6c5c18a/alembic-1.18.5.tar.gz", hash = "sha256:1554982221dd17e9a749b53902407578eb305e453f71999e8c7f0a48389fff8e", size = 2060480, upload-time = "2026-06-25T15:20:54.888Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/96/78/5fe6dc3a3a5b2f5a2a4faef8bfe336d5fa049a38884ab3172e0098160c01/alembic-1.18.5-py3-none-any.whl", hash = "sha256:06d8ba9d04558022f5395e9317de03d270f3dced49cee01f89fe7a13c26f14bc", size = 264664, upload-time = "2026-06-25T15:20:56.673Z" },
+]
+
 [[package]]
 name = "amsc-iri"
 version = "1.2.0"
@@ -318,6 +332,67 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/ae/3a/dbeec9d1ee0844c679f6bb5d6ad4e9f198b1224f4e7a32825f47f6192b0c/cffi-2.0.0-cp314-cp314t-win_arm64.whl", hash = "sha256:0a1527a803f0a659de1af2e1fd700213caba79377e27e4693648c2923da066f9", size = 184195, upload-time = "2025-09-08T23:23:43.004Z" },
 ]
 
+[[package]]
+name = "charset-normalizer"
+version = "3.4.9"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/bd/2a/23f34ec9d04624958e137efdc394888716353190e75f25dd22c7a2c7a8aa/charset_normalizer-3.4.9.tar.gz", hash = "sha256:673611bbd43f0810bec0b0f028ddeaaa501190339cac411f347ac76917c3ae7b", size = 152439, upload-time = "2026-07-07T14:34:58.454Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/70/4a/ecbd131485c07fcdfad54e28946d513e3da22ef3b4bd854dcafae54ec739/charset_normalizer-3.4.9-cp312-cp312-macosx_10_13_universal2.whl", hash = "sha256:45b0cc4e3556cd875e09102988d1ab8356c998b596c9fced84547c8138b487a0", size = 319300, upload-time = "2026-07-07T14:33:15.666Z" },
+    { url = "https://files.pythonhosted.org/packages/ec/96/5d9364e3342d69f3a045e1777bc47c85c383e6e9466d561b33fdb419d1f9/charset_normalizer-3.4.9-cp312-cp312-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:9b2aff1c7b3884512b9512c3eaadd9bab39fb45042ffaaa1dd08ff2b9f8109d9", size = 215802, upload-time = "2026-07-07T14:33:17.031Z" },
+    { url = "https://files.pythonhosted.org/packages/4b/4c/5361f9aa7f2cb58d94f2ab831b3d493f69efb1d239654b4744e3c09527cb/charset_normalizer-3.4.9-cp312-cp312-manylinux2014_ppc64le.manylinux_2_17_ppc64le.manylinux_2_28_ppc64le.whl", hash = "sha256:9104ed0bd76a429d46f9ec0dbc9b08ad1d2dcdf2b00a5a0daa1c145329b35b44", size = 237171, upload-time = "2026-07-07T14:33:18.576Z" },
+    { url = "https://files.pythonhosted.org/packages/50/78/ce342ca4ff30b2eb49fe6d9578df85974f90c67d294113e94efdd9664cbd/charset_normalizer-3.4.9-cp312-cp312-manylinux2014_s390x.manylinux_2_17_s390x.manylinux_2_28_s390x.whl", hash = "sha256:7b86a2b16095d250c6f58b3d9b2eee6f4147754344f3dab0922f7c9bf7d226c9", size = 233075, upload-time = "2026-07-07T14:33:20.084Z" },
+    { url = "https://files.pythonhosted.org/packages/01/c4/4fa4c8b3097a11f3c5f09a35b72ed6855fb1d332469504962ab7bafcc702/charset_normalizer-3.4.9-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:5e226f6218febc71f6c1fc2fafb91c226f75bdc1d8fb12d66823716e891608fd", size = 224256, upload-time = "2026-07-07T14:33:21.747Z" },
+    { url = "https://files.pythonhosted.org/packages/87/3a/ad914516df7e358a81aae018caa5e0470ba827fa6d763b1d2e87d920a5f6/charset_normalizer-3.4.9-cp312-cp312-manylinux_2_31_armv7l.whl", hash = "sha256:90c44bc373b7687f6948b693cceaea1348ae0975d7474746559494468e3c1d84", size = 208784, upload-time = "2026-07-07T14:33:23.313Z" },
+    { url = "https://files.pythonhosted.org/packages/d7/74/3c12f9755717dfe5c5c87da63f35d765fa0c00382ec26bf23f7fae34f2ba/charset_normalizer-3.4.9-cp312-cp312-manylinux_2_31_riscv64.manylinux_2_39_riscv64.whl", hash = "sha256:9cdef90ae47919cae358d8ab15797a800ed41da7aba5d72419fb510729e2ed4b", size = 219928, upload-time = "2026-07-07T14:33:24.814Z" },
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+    { name = "requests" },
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 name = "fastapi"
 version = "0.138.1"
@@ -668,6 +757,7 @@ name = "lclstream-api"
 version = "0.10.1"
 source = { editable = "." }
 dependencies = [
+    { name = "alembic" },
     { name = "amscrot-py" },
     { name = "dbos" },
     { name = "fastapi" },
@@ -691,11 +781,13 @@ dev = [
     { name = "pytest-asyncio" },
     { name = "pyzmq" },
     { name = "ruff" },
+    { name = "testcontainers" },
     { name = "types-pyyaml" },
 ]
 
 [package.metadata]
 requires-dist = [
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     { name = "fastapi", specifier = ">=0.136.3" },
@@ -719,6 +811,7 @@ dev = [
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     { name = "pyzmq", specifier = ">=26.0.0" },
     { name = "ruff", specifier = ">=0.15.17" },
+    { name = "testcontainers", extras = ["postgres"], specifier = ">=4.14.2" },
     { name = "types-pyyaml", specifier = ">=6.0.12.20260518" },
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 name = "yarl"
 version = "1.24.2"

From 63f36a129895be769c6778c6c258aa4145d882cb Mon Sep 17 00:00:00 2001
From: Sam Welborn <swelborn@slac.stanford.edu>
Date: Wed, 8 Jul 2026 11:39:45 -0400
Subject: [PATCH 8/8] re-add pyproject.toml so we can run alembic

---
 container/Containerfile | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/container/Containerfile b/container/Containerfile
index 631c7c9..bc90285 100644
--- a/container/Containerfile
+++ b/container/Containerfile
@@ -26,8 +26,10 @@ RUN --mount=type=cache,target=/root/.cache/uv \
 
 FROM python:3.14-slim
 
+WORKDIR /app
 # Copy the environment, but not the source code
 COPY --from=builder /app/.venv /app/.venv
+COPY --from=builder /app/pyproject.toml /app/pyproject.toml
 
 # Copy the configuration files
 COPY config/lclstream_api.json  /etc/lclstream_api.json