diff --git a/client/src/components/Chat/Input/CodeWorkspaceMenu.tsx b/client/src/components/Chat/Input/CodeWorkspaceMenu.tsx
index 35638c973dd..ccc64256e4f 100644
--- a/client/src/components/Chat/Input/CodeWorkspaceMenu.tsx
+++ b/client/src/components/Chat/Input/CodeWorkspaceMenu.tsx
@@ -1,5 +1,6 @@
-import { useId, useState } from 'react';
+import { Fragment, useId, useState } from 'react';
 import * as Ariakit from '@ariakit/react';
+import { isCodeWorkspaceCheckoutAvailable } from 'librechat-data-provider';
 import { TooltipAnchor, composerControlClasses, useToastContext } from '@librechat/client';
 import { Check, ChevronDown, Folder, FolderSync, FolderX, RefreshCw, Monitor } from 'lucide-react';
 import type { CodeWorkspaceSelection, TConversation } from 'librechat-data-provider';
@@ -103,10 +104,11 @@ function describeTransition(
 /** A sole advertised workspace is the only valid pick, so it counts as chosen until changed. */
 function chosenWorkspaceId(
   target: CodeWorkspaceEnvironmentResult,
-  choices: Record<string, string>,
+  choices: Record<string, CodeWorkspaceSelection>,
 ): string | undefined {
   const choice = choices[target.environment.id];
-  if (choice != null && target.workspaces.some(({ id }) => id === choice)) return choice;
+  if (choice != null && target.workspaces.some(({ id }) => id === choice.workspaceId))
+    return choice.workspaceId;
   return target.workspaces.length === 1 ? target.workspaces[0].id : undefined;
 }
 
@@ -118,6 +120,8 @@ function EnvironmentWorkspaces({
   hideOnClick,
   isSelected,
   onSelect,
+  checkout,
+  allowCheckoutSelection = false,
 }: {
   environment: CodeWorkspaceEnvironmentResult['environment'];
   requiredBy?: CodeWorkspaceEnvironmentResult['requiredBy'];
@@ -126,6 +130,8 @@ function EnvironmentWorkspaces({
   hideOnClick: boolean;
   isSelected: (workspaceId: string) => boolean;
   onSelect: (selection: CodeWorkspaceSelection) => void;
+  checkout?: CodeWorkspaceSelection['checkout'];
+  allowCheckoutSelection?: boolean;
 }) {
   const localize = useLocalize();
   return (
@@ -146,47 +152,106 @@ function EnvironmentWorkspaces({
       {workspaces.map((descriptor) => {
         const selected = isSelected(descriptor.id);
         return (
-          <Ariakit.MenuItemRadio
-            key={descriptor.id}
-            name={`codeWorkspace:${environment.id}`}
-            value={descriptor.id}
-            checked={selected}
-            hideOnClick={hideOnClick}
-            onChange={() => onSelect({ environmentId: environment.id, workspaceId: descriptor.id })}
-            className={menuItemClasses(selected)}
-          >
-            <Folder className="text-text-secondary mt-0.5 size-4 shrink-0" aria-hidden="true" />
-            <div className="min-w-0 flex-1 text-left">
-              <div className="text-text-primary truncate text-sm font-medium">
-                {descriptor.name ?? descriptor.id}
+          <Fragment key={descriptor.id}>
+            <Ariakit.MenuItemRadio
+              key={descriptor.id}
+              name={`codeWorkspace:${environment.id}`}
+              value={descriptor.id}
+              checked={selected}
+              hideOnClick={hideOnClick}
+              onChange={() =>
+                onSelect({ environmentId: environment.id, workspaceId: descriptor.id })
+              }
+              className={menuItemClasses(selected)}
+            >
+              <Folder className="text-text-secondary mt-0.5 size-4 shrink-0" aria-hidden="true" />
+              <div className="min-w-0 flex-1 text-left">
+                <div className="text-text-primary truncate text-sm font-medium">
+                  {descriptor.name ?? descriptor.id}
+                </div>
+                {descriptor.name && (
+                  <p className="text-text-secondary truncate text-xs">{descriptor.id}</p>
+                )}
+                {descriptor.instructions !== undefined && (
+                  <p className="text-text-secondary truncate text-xs">
+                    {descriptor.instructions.length === 0
+                      ? localize('com_ui_repository_instructions_none')
+                      : descriptor.instructions
+                          .map(
+                            (file) =>
+                              `${file.path} · ${(file.bytes / 1024).toFixed(1)} KB${file.truncated ? ` · ${localize('com_ui_repository_instructions_truncated')}` : ''}`,
+                          )
+                          .join(', ')}
+                  </p>
+                )}
+                {(descriptor.environment?.repo || descriptor.environment?.ref) && (
+                  <p className="text-text-secondary truncate text-xs">
+                    {[descriptor.environment.repo, descriptor.environment.ref]
+                      .filter(Boolean)
+                      .join(' · ')}
+                  </p>
+                )}
               </div>
-              {descriptor.name && (
-                <p className="text-text-secondary truncate text-xs">{descriptor.id}</p>
-              )}
-              {descriptor.instructions !== undefined && (
-                <p className="text-text-secondary truncate text-xs">
-                  {descriptor.instructions.length === 0
-                    ? localize('com_ui_repository_instructions_none')
-                    : descriptor.instructions
-                        .map(
-                          (file) =>
-                            `${file.path} · ${(file.bytes / 1024).toFixed(1)} KB${file.truncated ? ` · ${localize('com_ui_repository_instructions_truncated')}` : ''}`,
-                        )
-                        .join(', ')}
-                </p>
+              {selected && (
+                <Check className="text-text-primary mt-0.5 size-4 shrink-0" aria-hidden="true" />
               )}
-              {(descriptor.environment?.repo || descriptor.environment?.ref) && (
-                <p className="text-text-secondary truncate text-xs">
-                  {[descriptor.environment.repo, descriptor.environment.ref]
-                    .filter(Boolean)
-                    .join(' · ')}
-                </p>
+            </Ariakit.MenuItemRadio>
+            {selected &&
+              allowCheckoutSelection &&
+              environment.configSchema?.workspaces?.allowCheckoutSelection === true && (
+                <>
+                  <Ariakit.MenuHeading render={<div />} className={headingClasses}>
+                    {localize('com_ui_code_checkout_mode')}
+                  </Ariakit.MenuHeading>
+                  {(['isolated', 'source'] as const)
+                    .filter(
+                      (mode) =>
+                        mode === 'source' ||
+                        descriptor.workspaceInstances?.includes('git_worktree'),
+                    )
+                    .map((mode) => (
+                      <Ariakit.MenuItemRadio
+                        key={mode}
+                        name={`codeCheckout:${environment.id}`}
+                        value={mode}
+                        checked={checkout === mode}
+                        hideOnClick={hideOnClick}
+                        className={menuItemClasses(checkout === mode)}
+                        onChange={() =>
+                          onSelect({
+                            environmentId: environment.id,
+                            workspaceId: descriptor.id,
+                            checkout: mode,
+                          })
+                        }
+                      >
+                        <div className="min-w-0 flex-1 text-left">
+                          <div className="text-text-primary text-sm font-medium">
+                            {localize(
+                              mode === 'isolated'
+                                ? 'com_ui_code_checkout_isolated'
+                                : 'com_ui_code_checkout_source',
+                            )}
+                          </div>
+                          <p className="text-text-secondary text-xs">
+                            {localize(
+                              mode === 'isolated'
+                                ? 'com_ui_code_checkout_isolated_info'
+                                : 'com_ui_code_checkout_source_info',
+                            )}
+                          </p>
+                        </div>
+                        {checkout === mode && (
+                          <Check
+                            className="text-text-primary mt-0.5 size-4 shrink-0"
+                            aria-hidden="true"
+                          />
+                        )}
+                      </Ariakit.MenuItemRadio>
+                    ))}
+                </>
               )}
-            </div>
-            {selected && (
-              <Check className="text-text-primary mt-0.5 size-4 shrink-0" aria-hidden="true" />
-            )}
-          </Ariakit.MenuItemRadio>
+          </Fragment>
         );
       })}
     </div>
@@ -240,7 +305,7 @@ export default function CodeWorkspaceMenu({
   const { refresh, isRefreshing } = useCodeWorkspaceRefresh();
   const [moveDraft, setMoveDraft] = useState<{
     conversationId: string;
-    workspaces: Record<string, string>;
+    workspaces: Record<string, CodeWorkspaceSelection>;
   } | null>(null);
 
   if (!workspace.visible) return null;
@@ -272,6 +337,12 @@ export default function CodeWorkspaceMenu({
   const { transition } = workspace;
   const environmentIds = new Set(workspace.environments.map(({ environment }) => environment.id));
   const selectWorkspace = (selection: CodeWorkspaceSelection) => {
+    const previous = workspace.environments.find(
+      ({ environment }) => environment.id === selection.environmentId,
+    )?.selected;
+    if (selection.checkout == null && previous?.checkout != null) {
+      selection = { ...selection, checkout: previous.checkout };
+    }
     workspace.rememberSelection(selection);
     const replacedIds = new Set(
       workspace.machineOptionGroups?.filter((ids) => ids.includes(selection.environmentId)).flat(),
@@ -329,12 +400,24 @@ export default function CodeWorkspaceMenu({
   const chosenTargets =
     transition?.targets.flatMap((target) => {
       const workspaceId = chosenWorkspaceId(target, moveChoices);
-      return workspaceId == null
+      const previous = transition.from?.filter(
+        ({ environmentId, agentIds }) =>
+          environmentId === target.environment.id ||
+          agentIds?.some((id) => target.selectionOwners?.includes(id)),
+      );
+      const priorModes = new Set(
+        (previous?.length ? previous : (transition.from ?? [])).map(({ checkout }) => checkout),
+      );
+      const inheritedCheckout = priorModes.size === 1 ? [...priorModes][0] : undefined;
+      /** A mixed predecessor decision requires a deliberate mode, never an automatic fallback. */
+      return workspaceId == null ||
+        (priorModes.size > 1 && moveChoices[target.environment.id]?.checkout == null)
         ? []
         : [
             {
               environmentId: target.environment.id,
               workspaceId,
+              checkout: moveChoices[target.environment.id]?.checkout ?? inheritedCheckout,
               ...(target.selectionOwners?.length ? { agentIds: target.selectionOwners } : {}),
             },
           ];
@@ -347,7 +430,19 @@ export default function CodeWorkspaceMenu({
     transition.kind !== 'detach' &&
     (transition.targets.length > 0 || transition.retained.length > 0);
   const moveReady =
-    transition != null && chosenTargets.length === transition.targets.length && proposed.length > 0;
+    transition != null &&
+    chosenTargets.length === transition.targets.length &&
+    proposed.length > 0 &&
+    chosenTargets.every((selection) => {
+      const target = transition.targets.find(
+        ({ environment }) => environment.id === selection.environmentId,
+      );
+      return isCodeWorkspaceCheckoutAvailable(
+        selection,
+        target?.workspaces.find(({ id }) => id === selection.workspaceId),
+        target?.environment.configSchema?.workspaces?.allowCheckoutSelection === true,
+      );
+    });
   const applyTransition = (to: CodeWorkspaceSelection[]) => {
     if (transition == null || disabled || moveMutation.isLoading) return;
     moveMutation.mutate(
@@ -389,6 +484,18 @@ export default function CodeWorkspaceMenu({
   if (onlyDescriptor && (workspace.machineOptions?.length ?? 0) > 1) {
     label = `${onlyEnvironment?.environment.name ?? onlyEnvironment?.environment.id} · ${label}`;
   }
+  if (onlyEnvironment?.selected?.checkout != null) {
+    label = `${label} · ${localize(onlyEnvironment.selected.checkout === 'isolated' ? 'com_ui_code_checkout_isolated' : 'com_ui_code_checkout_source')}`;
+  }
+  const checkoutSummaries = workspace.environments.flatMap(
+    ({ environment, selected, workspaces }) => {
+      if (selected?.checkout == null) return [];
+      const descriptor = workspaces.find(({ id }) => id === selected.workspaceId);
+      return [
+        `${environment.name ?? environment.id} · ${descriptor?.name ?? selected.workspaceId} · ${localize(selected.checkout === 'isolated' ? 'com_ui_code_checkout_isolated' : 'com_ui_code_checkout_source')}`,
+      ];
+    },
+  );
   const Icon =
     workspace.mode === 'without_attached' ||
     workspace.state === 'missing' ||
@@ -459,6 +566,12 @@ export default function CodeWorkspaceMenu({
           <RefreshCw className="text-text-secondary size-3 shrink-0" aria-hidden="true" />
         </TooltipAnchor>
         <WorkspaceRequirements id={requirementsId} requirements={requirements} />
+        {workspace.environments.length > 1 && (
+          <WorkspaceRequirements
+            id={`${requirementsId}-checkouts`}
+            requirements={checkoutSummaries}
+          />
+        )}
       </div>
     );
   }
@@ -537,10 +650,25 @@ export default function CodeWorkspaceMenu({
                 emptyLabel={localize('com_ui_code_workspace_unavailable')}
                 hideOnClick={false}
                 isSelected={(workspaceId) => chosenWorkspaceId(target, moveChoices) === workspaceId}
-                onSelect={({ environmentId, workspaceId }) =>
+                allowCheckoutSelection={true}
+                checkout={
+                  chosenTargets.find(({ environmentId }) => environmentId === target.environment.id)
+                    ?.checkout
+                }
+                onSelect={(selection) =>
                   setMoveDraft({
                     conversationId: transition.conversationId,
-                    workspaces: { ...moveChoices, [environmentId]: workspaceId },
+                    workspaces: {
+                      ...moveChoices,
+                      [selection.environmentId]: {
+                        ...selection,
+                        checkout:
+                          selection.checkout ??
+                          chosenTargets.find(
+                            ({ environmentId }) => environmentId === selection.environmentId,
+                          )?.checkout,
+                      },
+                    },
                   })
                 }
               />
@@ -632,6 +760,8 @@ export default function CodeWorkspaceMenu({
                     workspace.mode === 'attached' && workspaceId === selected?.workspaceId
                   }
                   onSelect={selectWorkspace}
+                  checkout={selected?.checkout}
+                  allowCheckoutSelection={!workspace.locked}
                 />
               ),
             )}
@@ -711,6 +841,12 @@ export default function CodeWorkspaceMenu({
           </span>
         </Ariakit.MenuItem>
       </Ariakit.Menu>
+      {workspace.environments.length > 1 && (
+        <WorkspaceRequirements
+          id={`${requirementsId}-checkouts`}
+          requirements={checkoutSummaries}
+        />
+      )}
     </Ariakit.MenuProvider>
   );
 }
diff --git a/client/src/components/Chat/Input/__tests__/CodeWorkspaceMenu.spec.tsx b/client/src/components/Chat/Input/__tests__/CodeWorkspaceMenu.spec.tsx
index b1b7026cbe4..8df1f95fc2c 100644
--- a/client/src/components/Chat/Input/__tests__/CodeWorkspaceMenu.spec.tsx
+++ b/client/src/components/Chat/Input/__tests__/CodeWorkspaceMenu.spec.tsx
@@ -101,6 +101,159 @@ function renderMenu(ui: React.ReactElement) {
 }
 
 describe('CodeWorkspaceMenu', () => {
+  test.each(['source', 'isolated'] as const)(
+    'keeps explicit %s when choosing another repository on the same machine',
+    async (checkout) => {
+      const graph = workspace();
+      graph.environments[0].selected = {
+        environmentId: environment.id,
+        workspaceId: 'project-a',
+        checkout,
+      };
+      graph.environments[0].workspaces.push({ id: 'project-b', name: 'Project B' });
+      const setConversation = jest.fn();
+      renderMenu(
+        <CodeWorkspaceMenu setConversation={setConversation} workspace={graph} disabled={false} />,
+      );
+      await userEvent.click(screen.getByTestId('code-workspace'));
+      await userEvent.click(screen.getByRole('menuitemradio', { name: /Project B/ }));
+      expect(setConversation.mock.calls[0][0](conversation)).toMatchObject({
+        codeWorkspaces: [{ environmentId: environment.id, workspaceId: 'project-b', checkout }],
+      });
+    },
+  );
+
+  test('reports checkout modes for every environment on a restored sealed chat', () => {
+    const graph = workspace({ locked: true, transition: undefined });
+    graph.environments = ['source', 'isolated'].map((checkout, index) => ({
+      environment: { ...environment, id: `vm-${index}`, name: `Machine ${index}` },
+      state: 'ready' as const,
+      workspaces: [{ id: 'repo', name: `Repository ${index}` }],
+      selected: {
+        environmentId: `vm-${index}`,
+        workspaceId: 'repo',
+        checkout: checkout as 'source' | 'isolated',
+      },
+    }));
+    renderMenu(
+      <CodeWorkspaceMenu setConversation={jest.fn()} workspace={graph} disabled={false} />,
+    );
+    expect(
+      screen.getByText('Machine 0 · Repository 0 · com_ui_code_checkout_source'),
+    ).toBeInTheDocument();
+    expect(
+      screen.getByText('Machine 1 · Repository 1 · com_ui_code_checkout_isolated'),
+    ).toBeInTheDocument();
+  });
+
+  test.each(['source', 'isolated'] as const)(
+    'materializes an explicit %s choice from a legacy automatic selection',
+    async (checkout) => {
+      const selected = { environmentId: environment.id, workspaceId: 'project-a' };
+      const graph = workspace({
+        environments: [
+          {
+            environment: {
+              ...environment,
+              configSchema: { workspaces: { allowCheckoutSelection: true } },
+            },
+            state: 'ready',
+            workspaces: [{ id: 'project-a', workspaceInstances: ['git_worktree'] }],
+            selected,
+          },
+        ],
+      });
+      const setConversation = jest.fn();
+      renderMenu(
+        <CodeWorkspaceMenu setConversation={setConversation} workspace={graph} disabled={false} />,
+      );
+      await userEvent.click(screen.getByTestId('code-workspace'));
+      const isolated = screen.getByRole('menuitemradio', {
+        name: /com_ui_code_checkout_isolated/,
+      });
+      const source = screen.getByRole('menuitemradio', { name: /com_ui_code_checkout_source/ });
+      expect(isolated).toHaveAttribute('aria-checked', 'false');
+      expect(source).toHaveAttribute('aria-checked', 'false');
+      await userEvent.click(checkout === 'isolated' ? isolated : source);
+      expect(setConversation.mock.calls[0][0](conversation)).toMatchObject({
+        codeWorkspaces: [{ ...selected, checkout }],
+      });
+    },
+  );
+
+  test.each(['source', 'isolated'] as const)(
+    'saves an explicit %s checkout choice before sending',
+    async (checkout) => {
+      const selected = { environmentId: environment.id, workspaceId: 'project-a' };
+      const graph = workspace({
+        environments: [
+          {
+            environment: {
+              ...environment,
+              configSchema: { workspaces: { allowCheckoutSelection: true } },
+            },
+            state: 'ready',
+            workspaces: [{ id: 'project-a', workspaceInstances: ['git_worktree'] }],
+            selected: { ...selected, checkout: checkout === 'source' ? 'isolated' : 'source' },
+          },
+        ],
+      });
+      const setConversation = jest.fn();
+      renderMenu(
+        <CodeWorkspaceMenu setConversation={setConversation} workspace={graph} disabled={false} />,
+      );
+      await userEvent.click(screen.getByTestId('code-workspace'));
+      await userEvent.click(
+        screen.getByRole('menuitemradio', {
+          name: new RegExp(
+            checkout === 'source' ? 'com_ui_code_checkout_source' : 'com_ui_code_checkout_isolated',
+          ),
+        }),
+      );
+      expect(setConversation.mock.calls[0][0](conversation)).toMatchObject({
+        codeEnvironmentMode: 'attached',
+        codeWorkspaces: [{ ...selected, checkout }],
+      });
+    },
+  );
+
+  test.each([
+    { enabled: false, capable: true },
+    { enabled: true, capable: false },
+  ])('gates each checkout choice by policy and capability: %j', async ({ enabled, capable }) => {
+    const graph = workspace();
+    graph.environments[0].environment = {
+      ...environment,
+      configSchema: { workspaces: { allowCheckoutSelection: enabled } },
+    };
+    graph.environments[0].workspaces = [
+      {
+        id: 'project-a',
+        ...(capable ? { workspaceInstances: ['git_worktree'] as ['git_worktree'] } : {}),
+      },
+    ];
+    const setConversation = jest.fn();
+    renderMenu(
+      <CodeWorkspaceMenu setConversation={setConversation} workspace={graph} disabled={false} />,
+    );
+    await userEvent.click(screen.getByTestId('code-workspace'));
+    if (!enabled) {
+      expect(screen.queryByText('com_ui_code_checkout_mode')).not.toBeInTheDocument();
+    } else {
+      expect(
+        screen.queryByRole('menuitemradio', { name: /com_ui_code_checkout_isolated/ }),
+      ).not.toBeInTheDocument();
+      await userEvent.click(
+        screen.getByRole('menuitemradio', { name: /com_ui_code_checkout_source/ }),
+      );
+      expect(setConversation.mock.calls[0][0](conversation)).toMatchObject({
+        codeWorkspaces: [
+          { environmentId: environment.id, workspaceId: 'project-a', checkout: 'source' },
+        ],
+      });
+    }
+  });
+
   test('explains the missing reviewer workspace while the selected primary workspace is ready', async () => {
     const reviewerMachine = { ...environment, id: 'reviewer-vm', name: 'Danny Skynet Trusted VM' };
     const graph = workspace({ state: 'choose', canSubmit: false });
@@ -809,6 +962,126 @@ describe('CodeWorkspaceMenu', () => {
       jest.restoreAllMocks();
     });
 
+    test.each(['source', 'isolated'] as const)(
+      'chooses an explicit %s checkout during attachment',
+      async (checkout) => {
+        const selectedTarget = target(
+          { ...environment, configSchema: { workspaces: { allowCheckoutSelection: true } } },
+          [{ id: 'project-a', workspaceInstances: ['git_worktree'] }],
+        );
+        const graph = relocatable([selectedTarget]);
+        graph.transition = { ...graph.transition!, kind: 'attach', from: [], previous: [] };
+        const moveSpy = jest
+          .spyOn(dataService, 'moveConversationCodeEnvironment')
+          .mockResolvedValue({
+            conversationId: 'existing',
+            codeEnvironmentMode: 'attached',
+            codeWorkspaces: [{ ...moved, checkout }],
+          });
+        renderMenu(
+          <CodeWorkspaceMenu setConversation={jest.fn()} workspace={graph} disabled={false} />,
+        );
+        await userEvent.click(screen.getByTestId('code-workspace'));
+        await userEvent.click(
+          screen.getByRole('menuitemradio', {
+            name: new RegExp(
+              checkout === 'source'
+                ? 'com_ui_code_checkout_source'
+                : 'com_ui_code_checkout_isolated',
+            ),
+          }),
+        );
+        await userEvent.click(
+          screen.getByRole('menuitem', { name: /com_ui_code_workspace_attach/ }),
+        );
+        await waitFor(() =>
+          expect(moveSpy).toHaveBeenCalledWith({
+            conversationId: 'existing',
+            from: [],
+            to: [{ ...moved, checkout }],
+          }),
+        );
+      },
+    );
+
+    test.each(['unsupported isolation', 'mixed predecessors'] as const)(
+      'requires an explicit source choice for %s',
+      async (scenario) => {
+        const graph = relocatable([
+          target(
+            { ...environment, configSchema: { workspaces: { allowCheckoutSelection: true } } },
+            [{ id: 'project-a' }],
+          ),
+        ]);
+        graph.transition = {
+          ...graph.transition!,
+          from:
+            scenario === 'unsupported isolation'
+              ? [{ ...mac, checkout: 'isolated' }]
+              : [
+                  { ...mac, checkout: 'isolated' },
+                  { environmentId: 'other-vm', workspaceId: 'repo', checkout: 'source' },
+                ],
+        };
+        const moveSpy = jest
+          .spyOn(dataService, 'moveConversationCodeEnvironment')
+          .mockResolvedValue({
+            conversationId: 'existing',
+            codeEnvironmentMode: 'attached',
+            codeWorkspaces: [{ ...moved, checkout: 'source' }],
+          });
+        renderMenu(
+          <CodeWorkspaceMenu setConversation={jest.fn()} workspace={graph} disabled={false} />,
+        );
+        await userEvent.click(screen.getByTestId('code-workspace-move'));
+        expect(await confirmItem()).toHaveAttribute('aria-disabled', 'true');
+        expect(moveSpy).not.toHaveBeenCalled();
+        await userEvent.click(
+          screen.getByRole('menuitemradio', { name: /com_ui_code_checkout_source/ }),
+        );
+        await userEvent.click(await confirmItem());
+        await waitFor(() =>
+          expect(moveSpy).toHaveBeenCalledWith(
+            expect.objectContaining({ to: [{ ...moved, checkout: 'source' }] }),
+          ),
+        );
+      },
+    );
+
+    test('preserves registered checkout when recovering onto a replacement workspace', async () => {
+      const graph = relocatable([
+        target({ ...environment, configSchema: { workspaces: { allowCheckoutSelection: true } } }, [
+          { id: 'project-a', workspaceInstances: ['git_worktree'] },
+        ]),
+      ]);
+      const old = {
+        environmentId: environment.id,
+        workspaceId: 'deleted',
+        checkout: 'source' as const,
+      };
+      graph.transition = { ...graph.transition!, from: [old] };
+      const moveSpy = jest.spyOn(dataService, 'moveConversationCodeEnvironment').mockResolvedValue({
+        conversationId: 'existing',
+        codeEnvironmentMode: 'attached',
+        codeWorkspaces: [{ ...moved, checkout: 'source' }],
+      });
+      renderMenu(
+        <CodeWorkspaceMenu setConversation={jest.fn()} workspace={graph} disabled={false} />,
+      );
+      await userEvent.click(screen.getByTestId('code-workspace-move'));
+      expect(
+        screen.getByRole('menuitemradio', { name: /com_ui_code_checkout_source/ }),
+      ).toHaveAttribute('aria-checked', 'true');
+      await userEvent.click(await confirmItem());
+      await waitFor(() =>
+        expect(moveSpy).toHaveBeenCalledWith({
+          conversationId: 'existing',
+          from: [old],
+          to: [{ ...moved, checkout: 'source' }],
+        }),
+      );
+    });
+
     test('recovers in the same chat only after confirmation, preserving healthy environments', async () => {
       const missing = { ...moved, workspaceId: 'deleted-project' };
       const kept = { environmentId: 'team-vm', workspaceId: 'shared' };
diff --git a/client/src/hooks/Agents/__tests__/useCodeWorkspace.test.tsx b/client/src/hooks/Agents/__tests__/useCodeWorkspace.test.tsx
index 07888264214..8dad7c3b52b 100644
--- a/client/src/hooks/Agents/__tests__/useCodeWorkspace.test.tsx
+++ b/client/src/hooks/Agents/__tests__/useCodeWorkspace.test.tsx
@@ -43,6 +43,69 @@ const conversation = (codeWorkspaces?: TConversation['codeWorkspaces']): TConver
   }) as TConversation;
 
 describe('useCodeWorkspace', () => {
+  it.each([
+    { enabled: false, capable: true },
+    { enabled: true, capable: false },
+  ])('blocks a restored isolation choice when support disappears: %j', ({ enabled, capable }) => {
+    mockAgentsConfig().agentsConfig.statefulCodeSessions.environments[0].configSchema = {
+      workspaces: { allowCheckoutSelection: enabled },
+    };
+    mockStatus.mockReturnValue([
+      {
+        data: {
+          environmentId: 'personal-vm',
+          status: 'ready',
+          workspaces: [
+            { id: 'project-a', ...(capable ? { workspaceInstances: ['git_worktree'] } : {}) },
+          ],
+        },
+      },
+    ]);
+    const selected = [
+      { environmentId: 'personal-vm', workspaceId: 'project-a', checkout: 'isolated' as const },
+    ];
+    const { result } = renderHook(() =>
+      useCodeWorkspace({
+        ...conversation(selected),
+        conversationId: 'saved',
+        codeEnvironmentMode: 'attached',
+      }),
+    );
+    expect(result.current.canSubmit).toBe(false);
+    expect(result.current.resolveSubmission(selected)).toBeUndefined();
+  });
+
+  it.each(['source', 'isolated'] as const)(
+    'retains %s checkout through submission and restored-session resolution',
+    (checkout) => {
+      mockAgentsConfig().agentsConfig.statefulCodeSessions.environments[0].configSchema = {
+        workspaces: { allowCheckoutSelection: true },
+      };
+      mockStatus.mockReturnValue([
+        {
+          data: {
+            environmentId: 'personal-vm',
+            status: 'ready',
+            workspaces: [{ id: 'project-a', workspaceInstances: ['git_worktree'] }],
+          },
+        },
+      ]);
+      const selection = [{ environmentId: 'personal-vm', workspaceId: 'project-a', checkout }];
+      const { result, rerender } = renderHook(
+        ({ saved }) =>
+          useCodeWorkspace({
+            ...conversation(selection),
+            conversationId: saved ? 'saved' : 'new',
+            codeEnvironmentMode: 'attached',
+          }),
+        { initialProps: { saved: false } },
+      );
+      expect(result.current.resolveSubmission(selection)?.codeWorkspaces).toEqual(selection);
+      rerender({ saved: true });
+      expect(result.current.resolveSubmission(selection)?.codeWorkspaces).toEqual(selection);
+    },
+  );
+
   describe('per-chat machines', () => {
     function enableChoices() {
       const config = mockAgentsConfig().agentsConfig;
diff --git a/client/src/hooks/Agents/useCodeWorkspace.ts b/client/src/hooks/Agents/useCodeWorkspace.ts
index d5172549339..6bb848d4ab1 100644
--- a/client/src/hooks/Agents/useCodeWorkspace.ts
+++ b/client/src/hooks/Agents/useCodeWorkspace.ts
@@ -4,6 +4,7 @@ import {
   Tools,
   isEphemeralAgentId,
   isCodeWorkspaceSelections,
+  isCodeWorkspaceCheckoutAvailable,
   resolveCodeEnvironmentSelection,
 } from 'librechat-data-provider';
 import {
@@ -412,8 +413,15 @@ export default function useCodeWorkspace(
     ) {
       state = 'unavailable';
     } else if (status.data.workspaces == null) state = 'unsupported';
-    else if (selected != null) state = 'ready';
-    else if (stored != null) state = 'missing';
+    else if (selected != null) {
+      state = isCodeWorkspaceCheckoutAvailable(
+        selected,
+        workspaces.find(({ id }) => id === selected.workspaceId),
+        environment.configSchema?.workspaces?.allowCheckoutSelection === true,
+      )
+        ? 'ready'
+        : 'unsupported';
+    } else if (stored != null) state = 'missing';
     else if (workspaces.length === 0) state = 'unavailable';
     return {
       environment,
@@ -448,11 +456,20 @@ export default function useCodeWorkspace(
           result.state !== 'loading' &&
           result.state !== 'unavailable' &&
           result.state !== 'unsupported' &&
-          result.workspaces.some(({ id }) => id === requested.workspaceId)
+          result.workspaces.some(
+            (descriptor) =>
+              descriptor.id === requested.workspaceId &&
+              isCodeWorkspaceCheckoutAvailable(
+                requested,
+                descriptor,
+                result.environment.configSchema?.workspaces?.allowCheckoutSelection === true,
+              ),
+          )
         ) {
           resolved.push({
             environmentId: result.environment.id,
             workspaceId: requested.workspaceId,
+            ...(requested.checkout == null ? {} : { checkout: requested.checkout }),
             ...(requested.agentIds == null ? {} : { agentIds: requested.agentIds }),
           });
           continue;
diff --git a/client/src/locales/en/translation.json b/client/src/locales/en/translation.json
index db1c9239dbb..91cae9f43d2 100644
--- a/client/src/locales/en/translation.json
+++ b/client/src/locales/en/translation.json
@@ -3314,5 +3314,10 @@
   "com_ui_schedule_consent_error": "Authorization could not be updated. Reload the current state and try again.",
   "com_ui_schedule_consent_issuer": "Issuer: {{issuer}}",
   "com_ui_schedule_consent_audience": "Audience: {{audience}}",
-  "com_ui_schedule_consent_scopes": "Scopes: {{scopes}}"
+  "com_ui_schedule_consent_scopes": "Scopes: {{scopes}}",
+  "com_ui_code_checkout_mode": "Checkout mode",
+  "com_ui_code_checkout_isolated": "Isolated worktree",
+  "com_ui_code_checkout_isolated_info": "Created on the first workspace operation from the worker's Git snapshot. Uncommitted changes are not copied.",
+  "com_ui_code_checkout_source": "Registered checkout",
+  "com_ui_code_checkout_source_info": "Use the machine's registered checkout directly. Other chats may share these files."
 }
diff --git a/docs/workspace-checkouts.md b/docs/workspace-checkouts.md
new file mode 100644
index 00000000000..02cc251bb6e
--- /dev/null
+++ b/docs/workspace-checkouts.md
@@ -0,0 +1,54 @@
+# Conversation checkout choices
+
+A new coding chat can use the registered checkout directly or request its own
+isolated worktree. The choice is part of the conversation's existing machine
+and workspace decision, not a separate browser preference. Opening the picker
+does not create a checkout; the worker provisions isolation on the first
+workspace operation.
+
+## Enable
+
+First update every LibreChat API replica and client. Then opt in on the attached
+environment (or the control plane whose schema personal environments inherit):
+
+```yaml
+configSchema:
+  workspaces:
+    allowCheckoutSelection: true
+```
+
+The isolated choice requires the selected worker workspace to advertise
+`workspaceInstances: [git_worktree]`. A worker configured with
+`--conversation-worktree-root` can advertise this capability; use a private
+storage directory outside its registered roots. Follow the worker's admission,
+capacity and setup runbook. Do not restart workers with active assignments.
+Conversation-worktree provisioning and linked-worktree lanes are different
+worker configurations and cannot be enabled together on the same worker.
+
+In the composer workspace menu, select a repository, reopen the menu and choose
+**Isolated worktree** or **Registered checkout**. The recorded mode stays visible
+after reload. Once the chat's decision is sealed, the picker does not implicitly
+change that execution target. Continue without a workspace or explicitly attach
+again through the deployment's supported decision transitions.
+Those transitions offer the same checkout choices. A registered checkout is
+available even on a worker without isolation support. Mixed predecessor modes
+require an explicit choice before confirmation; they never become automatic
+shared-root execution silently.
+
+- **Isolated worktree** uses the worker's admitted Git snapshot. It does not copy
+  uncommitted source changes. An unavailable isolation capability fails closed;
+  the next command never falls back to shared source files.
+- **Registered checkout** uses the existing registered root. Other chats may
+  share those files. Normal workspace authorization, approvals, sandboxing and
+  scheduling still apply.
+
+No flag and no recorded checkout mode preserves the existing behavior:
+workers advertising conversation worktrees use them automatically, and other
+workers operate in the registered root. No migration is needed for old chats.
+Stored explicit modes require compatible readers; do not enable the flag during
+a rolling upgrade or roll back to an older reader while such chats are active.
+
+This control does not select a Git base ref, create a named linked-worktree lane,
+archive source, or remove dependencies. The descriptor's `environment.ref` is
+operator metadata, not proof of the source's current HEAD. Arbitrary base-ref
+selection and archive/restore need additional worker-owned protocol operations.
diff --git a/packages/api/src/agents/execution.spec.ts b/packages/api/src/agents/execution.spec.ts
index 7bb33d67bae..870defac2aa 100644
--- a/packages/api/src/agents/execution.spec.ts
+++ b/packages/api/src/agents/execution.spec.ts
@@ -770,6 +770,17 @@ describe('stateful code approval target binding', () => {
       { environmentId: 'environment-a', workspaceId: 'project-a', agentIds: ['agent-a'] },
     ]);
   });
+
+  it.each(['source', 'isolated'] as const)(
+    'retains the %s checkout when stripping live capabilities',
+    (checkout) => {
+      const selected = context();
+      selected.codeWorkspace!.checkout = checkout;
+      expect(getCodeWorkspaceSelections([selected])).toEqual([
+        { environmentId: 'environment-a', workspaceId: 'project-a', checkout },
+      ]);
+    },
+  );
 });
 
 describe('codeExecutionAuthHeaders', () => {
diff --git a/packages/api/src/agents/execution.ts b/packages/api/src/agents/execution.ts
index f3441b3a04c..4a29323c779 100644
--- a/packages/api/src/agents/execution.ts
+++ b/packages/api/src/agents/execution.ts
@@ -92,6 +92,7 @@ export function getCodeWorkspaceSelections(
     selections.set(workspace.environmentId, {
       environmentId: workspace.environmentId,
       workspaceId: workspace.workspaceId,
+      ...(workspace.checkout == null ? {} : { checkout: workspace.checkout }),
       ...(workspace.agentIds == null ? {} : { agentIds: [...workspace.agentIds] }),
     });
   }
diff --git a/packages/api/src/code/capabilities.spec.ts b/packages/api/src/code/capabilities.spec.ts
index 3155ca6d676..93a1b22a7c2 100644
--- a/packages/api/src/code/capabilities.spec.ts
+++ b/packages/api/src/code/capabilities.spec.ts
@@ -452,6 +452,75 @@ describe('resolveCodeExecutionWorkspaceContext', () => {
     expect(resolved.codeWorkspace?.environment).toEqual(environment);
   });
 
+  it.each(['source', 'isolated'] as const)(
+    'honors an explicit %s checkout choice',
+    async (checkout) => {
+      jest
+        .spyOn(globalThis, 'fetch')
+        .mockResolvedValue(
+          workspaceStatus([{ id: 'worktree', workspaceInstances: ['git_worktree'] }]),
+        );
+      const resolved = await resolveCodeExecutionWorkspaceContext({
+        context: {
+          ...context,
+          conversationWorkspaceInstanceId: 'c'.repeat(64),
+          codeEnvironmentConfigSchema: { workspaces: { allowCheckoutSelection: true } },
+        },
+        requestedSelections: [{ environmentId: 'personal', workspaceId: 'worktree', checkout }],
+        environments,
+        getAppConfig,
+      });
+      expect(resolved.codeWorkspace?.checkout).toBe(checkout);
+      expect(resolved.codeWorkspace?.workspaceInstanceId).toBe(
+        checkout === 'isolated' ? 'c'.repeat(64) : undefined,
+      );
+    },
+  );
+
+  it.each([
+    { enabled: false, capable: true, instance: 'c'.repeat(64) },
+    { enabled: true, capable: false, instance: 'c'.repeat(64) },
+    { enabled: true, capable: true, instance: undefined },
+  ])(
+    'refuses unsupported isolation instead of executing in the source: %j',
+    async ({ enabled, capable, instance }) => {
+      jest
+        .spyOn(globalThis, 'fetch')
+        .mockResolvedValue(
+          workspaceStatus([
+            { id: 'worktree', ...(capable ? { workspaceInstances: ['git_worktree'] } : {}) },
+          ]),
+        );
+      await expect(
+        resolveCodeExecutionWorkspaceContext({
+          context: {
+            ...context,
+            conversationWorkspaceInstanceId: instance,
+            codeEnvironmentConfigSchema: { workspaces: { allowCheckoutSelection: enabled } },
+          },
+          requestedSelections: [
+            { environmentId: 'personal', workspaceId: 'worktree', checkout: 'isolated' },
+          ],
+          environments,
+          getAppConfig,
+        }),
+      ).rejects.toMatchObject({ reason: 'unsupported' });
+    },
+  );
+
+  it('refuses a checkout choice that changes the sealed decision', async () => {
+    const selection = { environmentId: 'personal', workspaceId: 'worktree' };
+    await expect(
+      resolveCodeExecutionWorkspaceContext({
+        context,
+        persistedSelections: [{ ...selection, checkout: 'isolated' }],
+        requestedSelections: [{ ...selection, checkout: 'source' }],
+        environments,
+        getAppConfig,
+      }),
+    ).rejects.toMatchObject({ reason: 'locked' });
+  });
+
   it('activates a server-derived instance only when the worker advertises worktree support', async () => {
     const workspaceInstanceId = 'c'.repeat(64);
     jest
@@ -496,7 +565,9 @@ describe('resolveCodeExecutionWorkspaceContext', () => {
       resolveCodeExecutionWorkspaceContext({
         context: {
           ...context,
-          codeEnvironmentConfigSchema: { workspaces: { linkedWorktrees } },
+          codeEnvironmentConfigSchema: {
+            workspaces: { linkedWorktrees, allowCheckoutSelection: false },
+          },
           ...(instanceId ? { conversationWorkspaceInstanceId: instanceId } : {}),
         },
         requestedSelections: [{ environmentId: 'personal', workspaceId }],
diff --git a/packages/api/src/code/capabilities.ts b/packages/api/src/code/capabilities.ts
index 2214ce4771d..d76e1b089e0 100644
--- a/packages/api/src/code/capabilities.ts
+++ b/packages/api/src/code/capabilities.ts
@@ -2,6 +2,7 @@ import { logger } from '@librechat/data-schemas';
 import {
   isCodeWorkspaceSelections,
   canonicalizeCodeWorkspaceSelections,
+  isCodeWorkspaceCheckoutAvailable,
 } from 'librechat-data-provider';
 import type { CodeWorkspaceSelection } from 'librechat-data-provider';
 import type { CodeEnvironmentConfig, CodeExecutionContext } from '~/agents/execution';
@@ -141,21 +142,28 @@ export async function resolveCodeExecutionWorkspaceContext({
   if (!workspace) {
     throw new CodeWorkspaceSelectionError('missing');
   }
+  const supportsIsolation = workspace.workspaceInstances?.includes('git_worktree') === true;
+  if (
+    !isCodeWorkspaceCheckoutAvailable(
+      selection,
+      workspace,
+      context.codeEnvironmentConfigSchema?.workspaces?.allowCheckoutSelection === true,
+    ) ||
+    (selection.checkout === 'isolated' && !context.conversationWorkspaceInstanceId)
+  ) {
+    throw new CodeWorkspaceSelectionError('unsupported');
+  }
+  const usesIsolation =
+    selection.checkout !== 'source' && supportsIsolation && context.conversationWorkspaceInstanceId;
   return {
     ...context,
     codeWorkspace: {
       ...selection,
       operations: [...(workspace.operations ?? status.operations)],
-      ...(context.conversationWorkspaceInstanceId &&
-      workspace.workspaceInstances?.includes('git_worktree')
-        ? { workspaceInstanceId: context.conversationWorkspaceInstanceId }
-        : {}),
+      ...(usesIsolation ? { workspaceInstanceId: context.conversationWorkspaceInstanceId } : {}),
       ...(context.codeEnvironmentConfigSchema?.workspaces?.linkedWorktrees === true &&
       workspace.workspaceScopes?.includes('git_linked_worktree') &&
-      !(
-        context.conversationWorkspaceInstanceId &&
-        workspace.workspaceInstances?.includes('git_worktree')
-      )
+      !usesIsolation
         ? { linkedWorktrees: true }
         : {}),
       ...(status.maxCommandTimeoutMs == null
diff --git a/packages/api/src/code/http.spec.ts b/packages/api/src/code/http.spec.ts
index 71bb7b131b7..dde05c7c72f 100644
--- a/packages/api/src/code/http.spec.ts
+++ b/packages/api/src/code/http.spec.ts
@@ -1546,6 +1546,7 @@ describe('moving a sealed conversation code-environment decision', () => {
 
   function setup({
     movesEnabled = true,
+    checkoutEnabled = false,
     allowAttachDetach = true,
     stored = {
       conversationId: 'conversation-1',
@@ -1557,6 +1558,7 @@ describe('moving a sealed conversation code-environment decision', () => {
     fetchImpl = jest.fn().mockImplementation(async () => workerStatusResponse()),
   }: {
     movesEnabled?: boolean;
+    checkoutEnabled?: boolean;
     allowAttachDetach?: boolean;
     stored?: StoredDecision;
     job?: CodeEnvironmentGenerationJob;
@@ -1607,7 +1609,12 @@ describe('moving a sealed conversation code-environment decision', () => {
         endpoints: {
           [EModelEndpoint.agents]: {
             statefulCodeSessions: {
-              environments: [controlPlane],
+              environments: [
+                {
+                  ...controlPlane,
+                  configSchema: { workspaces: { allowCheckoutSelection: checkoutEnabled } },
+                },
+              ],
               conversationMoves: { enabled: movesEnabled, allowAttachDetach },
             },
           },
@@ -1673,6 +1680,39 @@ describe('moving a sealed conversation code-environment decision', () => {
     };
   }
 
+  test.each([
+    { checkout: 'source', enabled: false, capable: true, accepted: false },
+    { checkout: 'isolated', enabled: true, capable: false, accepted: false },
+    { checkout: 'isolated', enabled: false, capable: true, accepted: false },
+    { checkout: 'source', enabled: true, capable: false, accepted: true },
+    { checkout: 'isolated', enabled: true, capable: true, accepted: true },
+  ] as const)(
+    'validates checkout before persisting a move: %j',
+    async ({ checkout, enabled, capable, accepted }) => {
+      const { move, replaceDecision } = setup({
+        checkoutEnabled: enabled,
+        fetchImpl: jest.fn(async () =>
+          workerStatusResponse({
+            workspaces: [
+              { id: vm.workspaceId, ...(capable ? { workspaceInstances: ['git_worktree'] } : {}) },
+            ],
+          }),
+        ),
+      });
+      const to = [{ ...vm, checkout }];
+      const res = await move({ from: [mac], to });
+      expect(res.statusCode).toBe(accepted ? 200 : 409);
+      if (accepted) {
+        expect(replaceDecision).toHaveBeenCalledWith(
+          expect.objectContaining({ codeWorkspaces: to }),
+        );
+      } else {
+        expect(res.body).toEqual(expect.objectContaining({ reason: 'unsupported' }));
+        expect(replaceDecision).not.toHaveBeenCalled();
+      }
+    },
+  );
+
   test('moves a sealed decision onto a workspace the new machine registers', async () => {
     const { move, conversations, fetchImpl } = setup();
 
diff --git a/packages/api/src/code/http.ts b/packages/api/src/code/http.ts
index bd9e78e4d33..e7a425db5ec 100644
--- a/packages/api/src/code/http.ts
+++ b/packages/api/src/code/http.ts
@@ -1,6 +1,6 @@
 import { nanoid } from 'nanoid';
-import { EModelEndpoint } from 'librechat-data-provider';
 import { logger, type AppConfig } from '@librechat/data-schemas';
+import { EModelEndpoint, isCodeWorkspaceCheckoutAvailable } from 'librechat-data-provider';
 import type { CodeEnvironmentMode, CodeWorkspaceSelection } from 'librechat-data-provider';
 import type { Response } from 'express';
 import type {
@@ -363,9 +363,23 @@ export function createCodeEnvironmentHttpHandlers(deps: CodeEnvironmentHttpDeps)
     if (!current.workspaces || !current.operations) {
       throw new CodeWorkspaceSelectionError('unsupported');
     }
-    if (!current.workspaces.some(({ id }) => id === selection.workspaceId)) {
+    const workspace = current.workspaces.find(({ id }) => id === selection.workspaceId);
+    if (workspace == null) {
       throw new CodeWorkspaceSelectionError('missing');
     }
+    const configuration = policy.configurations.find(({ id }) => id === selection.environmentId);
+    const effectiveEnvironment = configuration
+      ? configuredAttachedControlPlane(policy.effectiveConfig, configuration.controlPlaneId ?? '')
+      : configuredControlPlane(policy.effectiveConfig, selection.environmentId);
+    if (
+      !isCodeWorkspaceCheckoutAvailable(
+        selection,
+        workspace,
+        effectiveEnvironment?.configSchema?.workspaces?.allowCheckoutSelection === true,
+      )
+    ) {
+      throw new CodeWorkspaceSelectionError('unsupported');
+    }
     if (
       previousWorkspaceId != null &&
       previousWorkspaceId !== selection.workspaceId &&
diff --git a/packages/data-provider/src/code/selection.spec.ts b/packages/data-provider/src/code/selection.spec.ts
index 5b33e8ff35d..9051b406160 100644
--- a/packages/data-provider/src/code/selection.spec.ts
+++ b/packages/data-provider/src/code/selection.spec.ts
@@ -1,7 +1,44 @@
-import { resolveCodeEnvironmentSelection } from './workspace';
+import {
+  resolveCodeEnvironmentSelection,
+  isCodeWorkspaceSelection,
+  canonicalizeCodeWorkspaceSelections,
+} from './workspace';
+import { EModelEndpoint, tConvoUpdateSchema } from '../schemas';
 import { appendAgentIdSuffix } from '../agents/identity';
+import createPayload from '../createPayload';
 
 describe('chat machine selection', () => {
+  it.each(['source', 'isolated'] as const)(
+    'validates and retains the %s checkout in the sealed identity',
+    (checkout) => {
+      const selection = { environmentId: 'vm', workspaceId: 'repo', checkout };
+      expect(isCodeWorkspaceSelection(selection)).toBe(true);
+      expect(canonicalizeCodeWorkspaceSelections([selection])).toEqual([selection]);
+      const conversation = {
+        conversationId: null,
+        endpoint: EModelEndpoint.agents,
+        endpointType: null,
+        codeWorkspaces: [selection],
+      };
+      expect(tConvoUpdateSchema.parse(conversation).codeWorkspaces).toEqual([selection]);
+      expect(
+        createPayload({
+          conversation,
+          endpointOption: { endpoint: EModelEndpoint.agents },
+          userMessage: { text: 'hello' },
+          codeEnvironmentMode: 'attached',
+          codeWorkspaces: [selection],
+        } as Parameters<typeof createPayload>[0]).payload.codeWorkspaces,
+      ).toEqual([selection]);
+    },
+  );
+
+  it.each([null, 'automatic', 'invalid', {}, 1])('rejects an invalid checkout: %j', (checkout) => {
+    expect(isCodeWorkspaceSelection({ environmentId: 'vm', workspaceId: 'repo', checkout })).toBe(
+      false,
+    );
+  });
+
   const defaultId = 'application-vm';
   const selections = [{ environmentId: 'runtime-vm', workspaceId: 'primary' }];
 
diff --git a/packages/data-provider/src/code/workspace.ts b/packages/data-provider/src/code/workspace.ts
index b3dbc431701..1b6afad5aa2 100644
--- a/packages/data-provider/src/code/workspace.ts
+++ b/packages/data-provider/src/code/workspace.ts
@@ -30,6 +30,7 @@ export const CODE_WORKSPACE_OPERATIONS = [
   'execute_command',
 ] as const;
 export const CODE_WORKSPACE_INSTANCE_TYPES = ['git_worktree'] as const;
+export const CODE_WORKSPACE_CHECKOUT_MODES = ['source', 'isolated'] as const;
 /** Scheduling scopes a worker can admit beneath one registered root. */
 export const CODE_WORKSPACE_SCOPES = ['git_linked_worktree'] as const;
 export const CODE_WORKSPACE_SELECTION_ERROR_REASONS = [
@@ -127,10 +128,27 @@ export function isCodeWorkspaceEnvironment(
 export interface CodeWorkspaceSelection {
   environmentId: string;
   workspaceId: string;
+  /** Omitted preserves the worker's legacy automatic isolation policy. */
+  checkout?: (typeof CODE_WORKSPACE_CHECKOUT_MODES)[number];
   /** Explicit graph-agent ownership of a chat machine choice; absent on legacy selections. */
   agentIds?: string[];
 }
 
+/** Explicit isolation never falls back to shared files when a capability or policy disappears. */
+export function isCodeWorkspaceCheckoutAvailable(
+  selection: Pick<CodeWorkspaceSelection, 'checkout'>,
+  workspace: Pick<CodeWorkspaceDescriptor, 'workspaceInstances'> | undefined,
+  allowSelection: boolean,
+): boolean {
+  return (
+    selection.checkout == null ||
+    (allowSelection &&
+      workspace != null &&
+      (selection.checkout === 'source' ||
+        workspace.workspaceInstances?.includes('git_worktree') === true))
+  );
+}
+
 export function isCodeEnvironmentMode(value: unknown): value is CodeEnvironmentMode {
   return CODE_ENVIRONMENT_MODES.some((mode) => mode === value);
 }
@@ -148,12 +166,15 @@ export function isCodeWorkspaceSelection(value: unknown): value is CodeWorkspace
   const selection = value as Record<string, unknown>;
   return (
     Object.keys(selection).every((key) =>
-      ['environmentId', 'workspaceId', 'agentIds'].includes(key),
+      ['environmentId', 'workspaceId', 'agentIds', 'checkout'].includes(key),
     ) &&
     typeof selection.environmentId === 'string' &&
     CODE_WORKSPACE_ID_PATTERN.test(selection.environmentId) &&
     typeof selection.workspaceId === 'string' &&
     CODE_WORKSPACE_ID_PATTERN.test(selection.workspaceId) &&
+    (selection.checkout === undefined ||
+      selection.checkout === 'source' ||
+      selection.checkout === 'isolated') &&
     (selection.agentIds === undefined ||
       (Array.isArray(selection.agentIds) &&
         selection.agentIds.length > 0 &&
@@ -189,9 +210,10 @@ export function canonicalizeCodeWorkspaceSelections(
   selections: CodeWorkspaceSelection[],
 ): CodeWorkspaceSelection[] {
   return selections
-    .map(({ environmentId, workspaceId, agentIds }) => ({
+    .map(({ environmentId, workspaceId, agentIds, checkout }) => ({
       environmentId,
       workspaceId,
+      ...(checkout == null ? {} : { checkout }),
       ...(agentIds == null ? {} : { agentIds: [...agentIds].sort() }),
     }))
     .sort((left, right) => left.environmentId.localeCompare(right.environmentId));
diff --git a/packages/data-provider/src/config.spec.ts b/packages/data-provider/src/config.spec.ts
index d18d2b4f1e1..61058f5c826 100644
--- a/packages/data-provider/src/config.spec.ts
+++ b/packages/data-provider/src/config.spec.ts
@@ -963,8 +963,18 @@ describe('attached code environment user config schema', () => {
     });
   });
 
+  it('keeps checkout selection disabled by default without creating workspace policy', () => {
+    expect(codeEnvironmentUserConfigSchema.parse({})).not.toHaveProperty('workspaces');
+    expect(codeEnvironmentUserConfigSchema.parse({ workspaces: {} }).workspaces).toEqual({
+      allowCheckoutSelection: false,
+    });
+  });
+
   it.each([
     [{ linkedWorktrees: true }, true],
+    [{ allowCheckoutSelection: true }, true],
+    [{ allowCheckoutSelection: false }, true],
+    [{ allowCheckoutSelection: 'yes' }, false],
     [{ linkedWorktrees: 'yes' }, false],
     [{ linkedWorktrees: true, subdirectories: true }, false],
   ])('validates the linked worktree lane toggle %p', (workspaces, valid) => {
diff --git a/packages/data-provider/src/config.ts b/packages/data-provider/src/config.ts
index 8139be62821..9803632338b 100644
--- a/packages/data-provider/src/config.ts
+++ b/packages/data-provider/src/config.ts
@@ -1350,6 +1350,9 @@ export const codeEnvironmentUserConfigSchema = z
          * worker advertises linked-worktree lanes. Omission keeps every request scoped to
          * its checkout. */
         linkedWorktrees: z.boolean().optional(),
+        /** Permit explicit per-conversation checkout choices after every API replica supports
+         * them. Omission preserves automatic worker isolation and hides the selector. */
+        allowCheckoutSelection: z.boolean().optional().default(false),
       })
       .strict()
       .optional(),
diff --git a/packages/data-provider/src/schemas.ts b/packages/data-provider/src/schemas.ts
index c3960e60f0d..2f062b4d331 100644
--- a/packages/data-provider/src/schemas.ts
+++ b/packages/data-provider/src/schemas.ts
@@ -7,6 +7,7 @@ import type { TFile } from './types/files';
 import {
   CODE_ENVIRONMENT_MODES,
   CODE_WORKSPACE_ID_PATTERN,
+  CODE_WORKSPACE_CHECKOUT_MODES,
   MAX_AGENT_CODE_ENVIRONMENT_CHOICES,
 } from './code/workspace';
 import { userSubmittedMessageFieldPathSchema } from './filters';
@@ -1202,6 +1203,7 @@ export const tConversationSchema = z.object({
         .object({
           environmentId: z.string().regex(CODE_WORKSPACE_ID_PATTERN),
           workspaceId: z.string().regex(CODE_WORKSPACE_ID_PATTERN),
+          checkout: z.enum(CODE_WORKSPACE_CHECKOUT_MODES).optional(),
           agentIds: z
             .array(z.string().regex(CODE_WORKSPACE_ID_PATTERN))
             .min(1)
diff --git a/packages/data-schemas/src/methods/conversation.spec.ts b/packages/data-schemas/src/methods/conversation.spec.ts
index becc2ed8b33..5795a4231ca 100644
--- a/packages/data-schemas/src/methods/conversation.spec.ts
+++ b/packages/data-schemas/src/methods/conversation.spec.ts
@@ -1338,6 +1338,24 @@ describe('Conversation Operations', () => {
     const userId = 'user123';
     const unsetFields = { codeEnvironmentMode: 1, codeWorkspaces: 1 };
 
+    it.each(['source', 'isolated'] as const)(
+      'preserves the %s checkout through save, reload and a stale save',
+      async (checkout) => {
+        const conversationId = uuidv4();
+        const codeWorkspaces = [{ ...mac, checkout }];
+        await saveConvo(
+          { userId },
+          { conversationId, codeEnvironmentMode: 'attached', codeWorkspaces },
+        );
+        expect((await getConvo(userId, conversationId))?.codeWorkspaces).toEqual(codeWorkspaces);
+        await saveConvo({ userId }, { conversationId, codeWorkspaces: [mac], title: 'Later save' });
+        expect(
+          (await methods.readAdmittedConvoCodeEnvironmentDecision(userId, conversationId))
+            ?.codeWorkspaces,
+        ).toEqual(codeWorkspaces);
+      },
+    );
+
     it('preserves explicit agent ownership through save, reload and a stale ordinary save', async () => {
       const conversationId = uuidv4();
       const codeWorkspaces = [{ ...mac, agentIds: ['primary', 'reviewer'] }];
diff --git a/packages/data-schemas/src/schema/defaults.spec.ts b/packages/data-schemas/src/schema/defaults.spec.ts
new file mode 100644
index 00000000000..243ea80215d
--- /dev/null
+++ b/packages/data-schemas/src/schema/defaults.spec.ts
@@ -0,0 +1,31 @@
+import { Schema, model, deleteModel } from 'mongoose';
+import { conversationPreset } from './defaults';
+
+describe('conversation checkout persistence', () => {
+  const Checkout = model(
+    'CheckoutPersistenceTest',
+    new Schema({ codeWorkspaces: conversationPreset.codeWorkspaces }),
+  );
+
+  afterAll(() => deleteModel('CheckoutPersistenceTest'));
+
+  it.each(['source', 'isolated'] as const)(
+    'round trips the %s checkout through the real schema',
+    (checkout) => {
+      const selection = { environmentId: 'machine', workspaceId: 'repo', checkout };
+      const saved = new Checkout({ codeWorkspaces: [selection] });
+      expect(saved.validateSync()).toBeUndefined();
+      expect(saved.toObject().codeWorkspaces).toEqual([selection]);
+    },
+  );
+
+  it('keeps legacy decisions field-less and rejects unknown modes', () => {
+    const selection = { environmentId: 'machine', workspaceId: 'repo' };
+    expect(new Checkout({ codeWorkspaces: [selection] }).toObject().codeWorkspaces).toEqual([
+      selection,
+    ]);
+    expect(
+      new Checkout({ codeWorkspaces: [{ ...selection, checkout: 'wrong' }] }).validateSync(),
+    ).toBeDefined();
+  });
+});
diff --git a/packages/data-schemas/src/schema/defaults.ts b/packages/data-schemas/src/schema/defaults.ts
index 5529ecabb06..d87d5304645 100644
--- a/packages/data-schemas/src/schema/defaults.ts
+++ b/packages/data-schemas/src/schema/defaults.ts
@@ -1,5 +1,9 @@
 import { Schema } from 'mongoose';
-import { CODE_APPROVAL_MODES, CODE_ENVIRONMENT_MODES } from 'librechat-data-provider';
+import {
+  CODE_APPROVAL_MODES,
+  CODE_ENVIRONMENT_MODES,
+  CODE_WORKSPACE_CHECKOUT_MODES,
+} from 'librechat-data-provider';
 
 // @ts-ignore
 export const conversationPreset: {
@@ -129,6 +133,7 @@ export const conversationPreset: {
     type: {
       environmentId: { type: StringConstructor; required: boolean };
       workspaceId: { type: StringConstructor; required: boolean };
+      checkout: { type: StringConstructor; enum: string[]; default: undefined };
       agentIds: { type: StringConstructor[]; default: undefined };
       _id: boolean;
     }[];
@@ -330,6 +335,7 @@ export const conversationPreset: {
       {
         environmentId: { type: String, required: true },
         workspaceId: { type: String, required: true },
+        checkout: { type: String, enum: [...CODE_WORKSPACE_CHECKOUT_MODES], default: undefined },
         agentIds: { type: [String], default: undefined },
         _id: false,
       },