Issues

• SearchIndex.filecheck silently skips files previously marked as ERROR

  Future-House/paper-qa#1355 · Filter by author rokokol opened on Sep 21, 2026
  1

• Insecure pickle deserialization in PaperQA2 persisted search indexes can lead to code execution when querying a poisoned index

  bug
  Future-House/paper-qa#1325 · Filter by author beanduan22 opened on May 7, 2026

• Is paper-qa able to use opencode's big-pickle model?

  question
  Future-House/paper-qa#1324 · Filter by author 66-firebat opened on Apr 23, 2026
  1

• Article file indexing not working with local model

  bug
  Future-House/paper-qa#1321 · Filter by author gdurif opened on Mar 26, 2026
  17

• LiteLLM unnecessary memory usage when only trying to use paper metadata features

  Future-House/paper-qa#1317 · Filter by author microfauna opened on Mar 17, 2026
  3

• Please add a Claude skill for paper-qa

  enhancement
  Future-House/paper-qa#1294 · Filter by author Emasoft opened on Feb 19, 2026

• missing option for trapping exceptions during indexing

  enhancement
  Future-House/paper-qa#1275 · Filter by author satra opened on Jan 25, 2026
  2

• TimeoutError: Timeout (60.00999999999663 secs): rate limit for key: ('client', 'gpt-5.2-2025-12-11')

  bug
  Future-House/paper-qa#1261 · Filter by author kirillkoncha opened on Jan 2, 2026
  7

• Potential Deserialization Vulnerability in SearchIndex.index_files Using pickle.loads

  bug
  Future-House/paper-qa#1227 · Filter by author Doria77486 opened on Dec 8, 2025
  3

• To increase the speed of this library

  question
  Future-House/paper-qa#1183 · Filter by author takeruhukushima opened on Nov 7, 2025
  1

• Docs.delete doesn't remove from the texts_index

  bug
  Future-House/paper-qa#1140 · Filter by author jamesbraza opened on Oct 16, 2025
  4

• Error Parsing PDF

  bug
  Future-House/paper-qa#1068 · Filter by author dmcgrath19 opened on Aug 20, 2025
  11

• For the same code, I run it on Google Colab and it does not time out, but in local Python it prompts that the llm call timed out and reports an error:

  bug
  Future-House/paper-qa#1066 · Filter by author egtai opened on Aug 19, 2025
  1

• Make it easier to setup other models in the CLI

  enhancement
  Future-House/paper-qa#1044 · Filter by author kannib opened on Aug 5, 2025
  4

• locally hosted ollama model is not recognied with suggested input file

  bug
  Future-House/paper-qa#1040 · Filter by author krishnapitike opened on Jul 29, 2025
  4

• Supporting Supplemental Information

  enhancement
  Future-House/paper-qa#1028 · Filter by author jamesbraza opened on Jul 24, 2025
  3

• How to change metadata provider（Crossref and Semantic Scholar）?

  question
  Future-House/paper-qa#1014 · Filter by author Hamesen opened on Jul 18, 2025
  6

• ParsingSettings.disable_doc_valid_check superceded by contents length

  bug
  Future-House/paper-qa#966 · Filter by author jamesbraza opened on Jun 11, 2025

• How to skip crossref and semantic?

  bugneeds information
  Future-House/paper-qa#954 · Filter by author sekaiyon opened on May 26, 2025
  6

• "AuthenticationError: OpenAIException - Error code: 401" with Docs object

  bug
  Future-House/paper-qa#950 · Filter by author bigboisw opened on May 14, 2025
  1

• PaperQA for clinical trials Query does not give right results

  bugneeds information
  Future-House/paper-qa#939 · Filter by author lk4ml opened on Apr 24, 2025
  3

• Use pdf checksums instead of file paths for indexing?

  enhancement
  Future-House/paper-qa#924 · Filter by author khughitt opened on Mar 29, 2025
  2

• Hoping for confirmation of a few high-level ideas?

  documentationquestion
  Future-House/paper-qa#921 · Filter by author plbremer opened on Mar 27, 2025

• Allow custom 'citation', 'name', and other fields for a SearchIndex's Docs in manifest.csv

  enhancement
  Future-House/paper-qa#919 · Filter by author plbremer opened on Mar 27, 2025

• Extracting BibTeX from textual PDF ?

  question
  Future-House/paper-qa#913 · Filter by author Snikch63200 opened on Mar 18, 2025