lab-protocols/_quarto.yml at main · Eomesodermin/lab-protocols · GitHub

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project:
  type: website
  output-dir: docs
  resources:
    - protocols_src/templates/*
    - protocols_src/resources/*.html
  render:
    - "*.qmd"
    - "**/*.qmd"
    - "!protocols_src/templates/blocks/"

website:
  title: "Protocol Library"
  bread-crumbs: true

  navbar:
    search: true
    left:
      - text: "Home"
        href: index.qmd
      - text: "Mouse"
        href: protocols_src/mouse/index.qmd
      - text: "Buffers"
        href: protocols_src/buffers/index.qmd
      - text: "General"
        href: protocols_src/general/index.qmd

  sidebar:
    style: "floating"
    contents:
      - href: index.qmd
        text: "Overview"
        icon: house

      - section: "Onboarding"
        icon: person-check
        contents:
          - href: protocols_src/onboarding/index.qmd
            text: "Onboarding overview"

          - href: protocols_src/onboarding/checklist.qmd
            text: "Onboarding checklist"

          - href: protocols_src/onboarding/contacts.qmd
            text: "Key contacts"

          - href: protocols_src/onboarding/training/data_and_reproducibility.qmd
            text: "Data and reproducibility"

          - section: "Lab information"
            contents:
              - href: protocols_src/onboarding/lab_info/index.qmd
                text: "Lab information overview"

              - href: protocols_src/onboarding/lab_info/lab_expectations.qmd
                text: "Lab expectations"

              - href: protocols_src/onboarding/lab_info/lab_etiquette.qmd
                text: "Lab etiquette"

              - href: protocols_src/onboarding/lab_info/communication_norms.qmd
                text: "Communication norms"

          - section: "Institute information"
            contents:
              - href: protocols_src/onboarding/institute/index.qmd
                text: "Institute overview"

              - href: protocols_src/onboarding/institute/institute_overview.qmd
                text: "Institute overview page"

              - href: protocols_src/onboarding/institute/research_groups.qmd
                text: "Research groups"

              - href: protocols_src/onboarding/institute/core_facilities.qmd
                text: "Core facilities"

      - href: protocols_src/buffers/index.qmd
        text: "Buffers"
        icon: droplet

      - href: protocols_src/general/index.qmd
        text: "General"
        icon: gear

      - href: protocols_src/human/index.qmd
        text: "Human"
        icon: person

      - href: protocols_src/mouse/index.qmd
        text: "Mouse"
        icon: mouse

      - href: protocols_src/resources/index.qmd
        text: "Resources"
        icon: link-45deg

      - href: protocols_src/templates/index.qmd
        text: "Templates"
        icon: file-earmark-spreadsheet

format:
  html:
    theme: flatly
    css: styles.css
    math: mathjax
    toc: true
    back-to-top: true
    format-links: [pdf]
    number-sections: false
    geometry: "margin=2cm"
    fontsize: 11pt
    colorlinks: false
  pdf:
    toc: false
    pdf-engine: xelatex
    number-sections: false
    geometry: "margin=2cm"
    fontsize: 11pt
    colorlinks: false